8RT7
Conformation-b of the full-length outer membrane core complex (trwh/virb7, trwf/virb9, trwe/virb10ctd) from the fully-assembled r388 type iv secretion system determined by cryo-em.
PDB DOI: 10.2210/pdb8rt7/pdb
Classification: MEMBRANE PROTEIN Organism(s): Escherichia Coli
Deposited: 2024-01-25 Deposition Author(s): Mace, K. , Waksman, G.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.93 Å
Conformation-b of the full-length outer membrane core complex (trwh/virb7, trwf/virb9, trwe/virb10ctd) from the fully-assembled r388 type iv secretion system determined by cryo-em.
Primary Citation of Related Structures: 8RT7
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| TrwH | A | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwH | D | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwH | G | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwH | J | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwH | M | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwH | P | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwE protein | S | 395 | Escherichia Coli | MFGRKKGDVIDAGAELERAEQERIEGEYGASELASERRPHTPGARTLLMVLLCVIAVVLVTLSYKAYKVRGVVEDDDAQPQQVVRQVIPGYTPRPIRPEPENVPEPPQPTTSVPAIQPAPVTQPVRPQPTGPREKTPYELARERMLRSGLTAGSGGGEDLPRPQGGDVPAGGLMGGGGGGGELAEKLQPMRLSGSSAGRLGNRDMLITQGTQLDCVLETRLVTTQPGMTTCHLTRDVYSTSGRVVLLDRGSKVVGFYQGGLRQGQARIFVQWSRIETPSGVVINLDSPGTGPLGEAGLGGWIDRHFWERFGGAIMISLIGDLGDWASRQGSRQGDNSIQFSNTANGVESAAAEALRNSINIPPTLYKNQGERVNILVARDLDFSDVYSLESIPTK |
| TrwF protein | V | 266 | Escherichia Coli | MKKLAIVALLASLHAVPALALDVPSSSRYDHRIRYVTYNPADVVQVDTVLGVATHIMLEEGEQYLTHAFGDSEAYAFARKGRHIFIKPQAELANTNLIVVTDRRSYKFRLQMRNDRNGAMYELAFRYPDTQARQTREANARAAVEAAFEQRVGAYYNLKYMMSGDKDIAPVNAWDDGRFTYFKFSANADLPSIYFVDAEGNESLVPRTTVGSSNNIIAVHKVNPKWMIRLGNRALAIFNEAYDPNGVPNDTGTASPAVRRVNKGGN |
| TrwE protein | Y | 395 | Escherichia Coli | MFGRKKGDVIDAGAELERAEQERIEGEYGASELASERRPHTPGARTLLMVLLCVIAVVLVTLSYKAYKVRGVVEDDDAQPQQVVRQVIPGYTPRPIRPEPENVPEPPQPTTSVPAIQPAPVTQPVRPQPTGPREKTPYELARERMLRSGLTAGSGGGEDLPRPQGGDVPAGGLMGGGGGGGELAEKLQPMRLSGSSAGRLGNRDMLITQGTQLDCVLETRLVTTQPGMTTCHLTRDVYSTSGRVVLLDRGSKVVGFYQGGLRQGQARIFVQWSRIETPSGVVINLDSPGTGPLGEAGLGGWIDRHFWERFGGAIMISLIGDLGDWASRQGSRQGDNSIQFSNTANGVESAAAEALRNSINIPPTLYKNQGERVNILVARDLDFSDVYSLESIPTK |
| TrwF protein | B | 266 | Escherichia Coli | MKKLAIVALLASLHAVPALALDVPSSSRYDHRIRYVTYNPADVVQVDTVLGVATHIMLEEGEQYLTHAFGDSEAYAFARKGRHIFIKPQAELANTNLIVVTDRRSYKFRLQMRNDRNGAMYELAFRYPDTQARQTREANARAAVEAAFEQRVGAYYNLKYMMSGDKDIAPVNAWDDGRFTYFKFSANADLPSIYFVDAEGNESLVPRTTVGSSNNIIAVHKVNPKWMIRLGNRALAIFNEAYDPNGVPNDTGTASPAVRRVNKGGN |
| TrwF protein | E | 266 | Escherichia Coli | MKKLAIVALLASLHAVPALALDVPSSSRYDHRIRYVTYNPADVVQVDTVLGVATHIMLEEGEQYLTHAFGDSEAYAFARKGRHIFIKPQAELANTNLIVVTDRRSYKFRLQMRNDRNGAMYELAFRYPDTQARQTREANARAAVEAAFEQRVGAYYNLKYMMSGDKDIAPVNAWDDGRFTYFKFSANADLPSIYFVDAEGNESLVPRTTVGSSNNIIAVHKVNPKWMIRLGNRALAIFNEAYDPNGVPNDTGTASPAVRRVNKGGN |
| TrwF protein | H | 266 | Escherichia Coli | MKKLAIVALLASLHAVPALALDVPSSSRYDHRIRYVTYNPADVVQVDTVLGVATHIMLEEGEQYLTHAFGDSEAYAFARKGRHIFIKPQAELANTNLIVVTDRRSYKFRLQMRNDRNGAMYELAFRYPDTQARQTREANARAAVEAAFEQRVGAYYNLKYMMSGDKDIAPVNAWDDGRFTYFKFSANADLPSIYFVDAEGNESLVPRTTVGSSNNIIAVHKVNPKWMIRLGNRALAIFNEAYDPNGVPNDTGTASPAVRRVNKGGN |
| TrwF protein | K | 266 | Escherichia Coli | MKKLAIVALLASLHAVPALALDVPSSSRYDHRIRYVTYNPADVVQVDTVLGVATHIMLEEGEQYLTHAFGDSEAYAFARKGRHIFIKPQAELANTNLIVVTDRRSYKFRLQMRNDRNGAMYELAFRYPDTQARQTREANARAAVEAAFEQRVGAYYNLKYMMSGDKDIAPVNAWDDGRFTYFKFSANADLPSIYFVDAEGNESLVPRTTVGSSNNIIAVHKVNPKWMIRLGNRALAIFNEAYDPNGVPNDTGTASPAVRRVNKGGN |
| TrwF protein | N | 266 | Escherichia Coli | MKKLAIVALLASLHAVPALALDVPSSSRYDHRIRYVTYNPADVVQVDTVLGVATHIMLEEGEQYLTHAFGDSEAYAFARKGRHIFIKPQAELANTNLIVVTDRRSYKFRLQMRNDRNGAMYELAFRYPDTQARQTREANARAAVEAAFEQRVGAYYNLKYMMSGDKDIAPVNAWDDGRFTYFKFSANADLPSIYFVDAEGNESLVPRTTVGSSNNIIAVHKVNPKWMIRLGNRALAIFNEAYDPNGVPNDTGTASPAVRRVNKGGN |
| TrwH | U | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwF protein | Q | 266 | Escherichia Coli | MKKLAIVALLASLHAVPALALDVPSSSRYDHRIRYVTYNPADVVQVDTVLGVATHIMLEEGEQYLTHAFGDSEAYAFARKGRHIFIKPQAELANTNLIVVTDRRSYKFRLQMRNDRNGAMYELAFRYPDTQARQTREANARAAVEAAFEQRVGAYYNLKYMMSGDKDIAPVNAWDDGRFTYFKFSANADLPSIYFVDAEGNESLVPRTTVGSSNNIIAVHKVNPKWMIRLGNRALAIFNEAYDPNGVPNDTGTASPAVRRVNKGGN |
| TrwF protein | T | 266 | Escherichia Coli | MKKLAIVALLASLHAVPALALDVPSSSRYDHRIRYVTYNPADVVQVDTVLGVATHIMLEEGEQYLTHAFGDSEAYAFARKGRHIFIKPQAELANTNLIVVTDRRSYKFRLQMRNDRNGAMYELAFRYPDTQARQTREANARAAVEAAFEQRVGAYYNLKYMMSGDKDIAPVNAWDDGRFTYFKFSANADLPSIYFVDAEGNESLVPRTTVGSSNNIIAVHKVNPKWMIRLGNRALAIFNEAYDPNGVPNDTGTASPAVRRVNKGGN |
| TrwF protein | W | 266 | Escherichia Coli | MKKLAIVALLASLHAVPALALDVPSSSRYDHRIRYVTYNPADVVQVDTVLGVATHIMLEEGEQYLTHAFGDSEAYAFARKGRHIFIKPQAELANTNLIVVTDRRSYKFRLQMRNDRNGAMYELAFRYPDTQARQTREANARAAVEAAFEQRVGAYYNLKYMMSGDKDIAPVNAWDDGRFTYFKFSANADLPSIYFVDAEGNESLVPRTTVGSSNNIIAVHKVNPKWMIRLGNRALAIFNEAYDPNGVPNDTGTASPAVRRVNKGGN |
| TrwF protein | Z | 266 | Escherichia Coli | MKKLAIVALLASLHAVPALALDVPSSSRYDHRIRYVTYNPADVVQVDTVLGVATHIMLEEGEQYLTHAFGDSEAYAFARKGRHIFIKPQAELANTNLIVVTDRRSYKFRLQMRNDRNGAMYELAFRYPDTQARQTREANARAAVEAAFEQRVGAYYNLKYMMSGDKDIAPVNAWDDGRFTYFKFSANADLPSIYFVDAEGNESLVPRTTVGSSNNIIAVHKVNPKWMIRLGNRALAIFNEAYDPNGVPNDTGTASPAVRRVNKGGN |
| TrwH | C | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwH | F | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwH | I | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwH | L | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwH | O | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwH | R | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
| TrwH | X | 47 | Escherichia Coli | MKTIIFAILMTGLLSACASAPKPKQPSDFNREPVNKTVPVEIQRGAL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-01-25 Deposition Author(s): Mace, K. , Waksman, G.