8ROR
Single-particle cryo-em of mycoplasma pneumoniae adhesin p1 complexed with the anti-adhesive fab fragment.
PDB DOI: 10.2210/pdb8ror/pdb
Classification: CELL ADHESION Organism(s): Mus Musculus , Mycoplasmoides Pneumoniae M129
Deposited: 2024-01-12 Deposition Author(s): Fita, I. , Kawamoto, A. , Kenri, T. , Marcos-Silva, M. , Miyata, M. , Namba, K. , Pinyol, J. , Vizarraga, D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.39 Å
Single-particle cryo-em of mycoplasma pneumoniae adhesin p1 complexed with the anti-adhesive fab fragment.
Fita, I. , Kawamoto, A. , Kenri, T. , Marcos-Silva, M. , Miyata, M. , Namba, K. , Pinyol, J. , Vizarraga, D.
Primary Citation of Related Structures: 8ROR
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Adhesin P1 | 1 | 1457 | Mus Musculus , Mycoplasmoides Pneumoniae M129 | NAINPRLTPWTYRNTSFSSLPLTGENPGAWALVRDNSAKGITAGSGSQQTTYDPTRTEAALTASTTFALRRYDLAGRALYDLDFSKLNPQTPTRDQTGQITFNPFGGFGLSGAAPQQWNEVKNKVPVEVAQDPSNPYRFAVLLVPRSVVYYEQLQRGLGLPQQRTESGQNTSTTGAMFGLKVKNAEADTAKSNEKLQGAEATGSSTTSGSGQSTQRGGSSGDTKVKALKIEVKKKSDSEDNGQLQLEKNDLANAPIKRSEESGQSVQLKADDFGTALSSSGSGGNSNPGSPTPWRPWLATEQIHKDLPKWSASILILYDAPYARNRTAIDRVDHLDPKAMTANYPPSWRTPKWNHHGLWDWKARDVLLQTTGFFNPRRHPEWFDGGQTVADNEKTGFDVDNSENTKQGFQKEADSDKSAPIALPFEAYFANIGNLTWFGQALLVFGGNGHVTKSAHTAPLSIGVFRVRYNATGTSATVTGWPYALLFSGMVNKQTDGLKDLPFNNNRWFEYVPRMAVAGAKFVGRELVLAGTITMGDTATVPRLLYDELESNLNLVAQGQGLLREDLQLFTPYGWANRPDLPIGAWSSSSSSSHNAPYYFHNNPDWQDRPIQNVVDAFIKPWEDKNGKDDAKYIYPYRYSGMWAWQVYNWSNKLTDQPLSADFVNENAYQPNSLFAAILNPELLAALPDKVKYGKENEFAANEYERFNQKLTVAPTQGTNWSHFSPTLSRFSTGFNLVGSVLDQVLDYVPWIGNGYRYGNNHRGVDDITAPQTSAGSSSGISTNTSGSRSFLPTFSNIGVGLKANVQATLGGSQTMITGGSPRRTLDQANLQLWTGAGWRNDKASSGQSDENHTKFTSATGMDQQGQSGTSAGNPDSLKQDNISKSGDSLTTQDGNAIDQQEATNYTNLPPNLTPTADWPNALSFTNKNNAQRAQLFLRGLLGSIPVLVNRSGSDSNKFQATDQKWSYTDLHSDQTKLNLPAYGEVNGLLNPALVETYFGNTRAGGSGSNTTSSPGIGFKIPEQNNDSKATLITPGLAWTPQDVGNLVVSGTTVSFQLGGWLVTFTDFVKPRAGYLGLQLTGLDASDATQRALIWAPRPWAAFRGSWVNRLGRVESVWDLKGVWADQAQSDSQGSTTTATRNALPEHPNALAFQVSVVEASAYKPNTSSGQTQSTNSSPYLHLVKPKKVTQSDKLDDDLKNLLDPNQVRTKLRQSFGTDHSTQPQPQSLKTTTPVFGTSSGNLSSVLSGGGAGGGSSGSGQSGVDLSPVEKVSGWLVGQLPSTSDGNTSSTNNLAPNTNTGNDVVGVGRLSESNAAKMNDDVDGIVRTPLAELLDGEGQTADTGPQSVKFKSPDQIDFNRLFTHPVTDLFDPVTMLVYDQYIPLFIDIPASVNPKMVRLKVLSFDTNEQSLGLRLEFFKPDQDTQPNNNVQVNPNNGDFLPLLTASSQGPQTLFSPF |
| Light Chain Fab | L | 218 | Mus Musculus , Mycoplasmoides Pneumoniae M129 | VLMTQTPLSLPVSLGDQASISCRFSQTIVHSNGATYLEWYLQRPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
| Heavy Chain Fab | H | 222 | Mus Musculus , Mycoplasmoides Pneumoniae M129 | EVQLQQSGPELVKPGTSMKISCKASGYSFTGYTMNWVKQSHGKSLEWIGLINPYNGGTNYNQKFRGTATLTVDKSSSTAYMELLSLTSEDSAVYYCARSNYAYDLLMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-01-12 Deposition Author(s): Fita, I. , Kawamoto, A. , Kenri, T. , Marcos-Silva, M. , Miyata, M. , Namba, K. , Pinyol, J. , Vizarraga, D.