8RO1
Structure of the c. elegans intron lariat spliceosome double-primed for disassembly (ils'')
PDB DOI: 10.2210/pdb8ro1/pdb
Classification: SPLICING Organism(s): Human Herpesvirus 6B (Strain Hst)
Deposited: 2024-01-11 Deposition Author(s): Plaschka, C. , Rothe, P. , Vorlaender, M.K.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.0 Å
Structure of the c. elegans intron lariat spliceosome double-primed for disassembly (ils'')
Plaschka, C. , Rothe, P. , Vorlaender, M.K.
Primary Citation of Related Structures: 8RO1
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| U2 snRNA | 2 | 228 | NA | AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
| Intron lariat RNA | in | 51 | NA | GUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNN |
| U5 snRNA | 5 | 112 | NA | ACUCUGGUUCCUCUGCAUUUAACCGUGAAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGCAAAGGAGCAUACAUUGAGUACAAUUUUUGGAGUCCCCUCGAGAGAGCGGGA |
| U6 snRNA | 6 | 101 | NA | GUUCUUCCGAGAACAUAUACUAAAAUUGGAACAAUACAGAGAAGAUUAGCAUGGCCCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAAAUUUU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Small nuclear ribonucleoprotein Sm D1 | J | 127 | Human Herpesvirus 6B (Strain Hst) | MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPRKKARAARAGASRGRGGRGGMRGGRGGRGRGRGGPRGAGPRR |
| Probable small nuclear ribonucleoprotein Sm D2 | K | 118 | Human Herpesvirus 6B (Strain Hst) | MSAQAKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNPLAQAE |
| Probable small nuclear ribonucleoprotein E | L | 90 | Human Herpesvirus 6B (Strain Hst) | MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLIHAAQQEA |
| CWF19-like protein 1 homolog | L1 | 533 | Human Herpesvirus 6B (Strain Hst) | MATQQAKILCCGDVNGNFVELIKKISTTEKKNGPFDSLFCVGEFFGDDDDSNEKVINGNIEFPIPTYILGPANPRYSYLYPEESIEFSSNLTYLGKKGLLNTASGLQIAYLSGVEGSSKDLSCFDKADVEELLIPLGTQVGFSGTDILLTSVWPADIARHSHNQPSKPQPGSVLLSKLAAHLKPRYHFAGLGVHYERQPYRNHRVLLEPARHTTRFIGLAAIGNPEKQKWLYACNVKPMRKMEKEELTAQPPNASEFPYRELLEEIAAKETLSRMNGNGQRPEGSQYRFEMGGAEDGAGNGRKRHNDGGNDGPRNKQPVGPCWFCLSNVDAEKHLVVAIGNKCYAAMPKGPLTEDHVMVLSVGHIQSQVSAPVEVRDEIEKFKSAFTLMANKQGKALVTFERNFRTQHLQVQMVMIDKSSSKALKSSFTTAAACAGFELVTMGPDESLLDMVNEGCPYFVAELPDGSKLFTRSMKGFPLHFGREVLASTPILDCEDKVDWKACVLAKEKEVELVNKLKSDFKPFDFTAEDDSD |
| CWF19-like protein 2 homolog | L2 | 460 | Human Herpesvirus 6B (Strain Hst) | MFRRPDDDDDDYSGRKVIKPKPIAEKYAKKLGSEFSTGKTFVTGSDKSQKDFYGSQQVRNDVMKSSDSGGAPLTEDEKNKLSAKILKAEMKGDTDLVKKLKRKLESGISGDDEPPKSKSKEVTMMRRDREGNILPASSRRSDSDRHGEGSSRMRREYEKSQDLDSMVREEKTGTAGDQLRLFERSLIKSSKIRRHDDESVDDIAEMQKGKKKSDEKDKKRKEKESIKEHKRIERSFDDCSRCIDSSRLKKHNIIAVGINTYLAVVEWDGLDDEHLIIVPTQHCSSTIQLDENVWDEMRLWRKGLVAVWKSQNRDCIFFEMSRHVDSNPHVFIECVPVEQEIGDMASIYFKKAINECEGEYMDNKKLIETKDLRRQIPKGFSYFAVDFGLSNGFAHVIESHDHFPSTFATEIIAGMLDLPPKKWRKRETDEMSKQKSRAENFKKLWEPVDWTKRLKNDSTK |
| Probable small nuclear ribonucleoprotein F | M | 85 | Human Herpesvirus 6B (Strain Hst) | MSAVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNVLYVGGVDGENETSA |
| Probable small nuclear ribonucleoprotein G | N | 77 | Human Herpesvirus 6B (Strain Hst) | MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNSVVIMEPKERIS |
| Probable U2 small nuclear ribonucleoprotein A' | O | 253 | Human Herpesvirus 6B (Strain Hst) | MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNFPTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTFIGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHTEDPSEIEPNENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVPEKGWNRQMDQNGADGEAMES |
| RRM domain-containing protein | P | 217 | Human Herpesvirus 6B (Strain Hst) | MADINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKPAKNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK |
| GCF C-terminal domain-containing protein | PX | 809 | Human Herpesvirus 6B (Strain Hst) | MFRKPKAKGAIRQRKSDGWDEPDAENQQVVSAIEVKQPAVPRPAMSFDADEGADSTFKLKKDKKKVEELKRQHKLEEEAEKLYKEEKIRKEALDKIVKKEKLSKEDKKTKNERHKYLDKYRDKSAKHISNSESYEYEENLDIDAEAISSVSNKFNSAFEGIPDSRAVFEAKKRRERARREGNQDGYIPLDDTQKLKSKSERNRLIREDENDDSDEECTNKFYSARELLRTEEDRRREEQEGFLERENGDIDEAERIKGDDDSENEEWEKQQIRKAVSRREIGQLRTEKRNTSKLFGHTVPVEDDTAMDMDIDLDMDVQVIGKPEFTGPSNTGGVVKIEDILAKLKLRIQERDEALNFRKEEKRKLEQNIEENKSMIAKIEMELPNQSTKYTMYQELRVYSRSLLECLNEKVGEINSIIDKKRDCGKSRTSRLSVRRRQDMRDQHAECMQGRNARMGEAAGRAAERDARRGRRRREREFTLARINHEEGLSTDDEEPTPQSMNDQKICDEVEAVASVLFADALDEYSDLRKVFGRMTDWLAVDPKSFQDAYVYLCIPKLSSPYVRLQILRADFLRKETILTSMQWFHIAMLAGSENAEIDQSHEILVELAPAIVEKVVIPFLIDTVKEEWDPMSLRQTRHLTTFCSLFEKLPNLTEKSKQFNAFLNAIRERICDCISEDLFMPIFMPNALEQPICRQFHDRQFWTCIKLIKSINALSPLISIAARFELVVEKCVNSQCVMALRTGSKNDVTAERKVRGLLAELDDSLLKMGGRTSFRQLIGTLELIAEEQSKAGRSFHKEIRKFLEKLER |
| Pre-mRNA-processing factor 19 | Q | 492 | Human Herpesvirus 6B (Strain Hst) | MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGTGSAPRNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISRLSKELTAAREALSTLKPHTSAKVDDDVSIDESEDQQGLSEAILAKLEEKSKSLTAERKQRGKNLPEGLAKTEELAELKQTASHTGIHSTGTPGITALDIKGNLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPVTDISLNASGDYILSASDDSYWAFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQPINSLSFDMTGTFLGIGGQKVQVLHVKSWSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFSF |
| Pre-mRNA-processing factor 19 | R | 492 | Human Herpesvirus 6B (Strain Hst) | MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGTGSAPRNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISRLSKELTAAREALSTLKPHTSAKVDDDVSIDESEDQQGLSEAILAKLEEKSKSLTAERKQRGKNLPEGLAKTEELAELKQTASHTGIHSTGTPGITALDIKGNLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPVTDISLNASGDYILSASDDSYWAFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQPINSLSFDMTGTFLGIGGQKVQVLHVKSWSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFSF |
| Pre-mRNA-processing factor 19 | S | 492 | Human Herpesvirus 6B (Strain Hst) | MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGTGSAPRNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISRLSKELTAAREALSTLKPHTSAKVDDDVSIDESEDQQGLSEAILAKLEEKSKSLTAERKQRGKNLPEGLAKTEELAELKQTASHTGIHSTGTPGITALDIKGNLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPVTDISLNASGDYILSASDDSYWAFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQPINSLSFDMTGTFLGIGGQKVQVLHVKSWSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFSF |
| Pre-mRNA-processing factor 19 | T | 492 | Human Herpesvirus 6B (Strain Hst) | MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGTGSAPRNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISRLSKELTAAREALSTLKPHTSAKVDDDVSIDESEDQQGLSEAILAKLEEKSKSLTAERKQRGKNLPEGLAKTEELAELKQTASHTGIHSTGTPGITALDIKGNLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPVTDISLNASGDYILSASDDSYWAFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQPINSLSFDMTGTFLGIGGQKVQVLHVKSWSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFSF |
| Septin and tuftelin-interacting protein 1 homolog | TF | 830 | Human Herpesvirus 6B (Strain Hst) | MEDDDGRESFEINDMDLEYAMNPGGRRRFQNKDQATYGVFAPDSDDDDDEQGTSRGPYKKRSKISAPMSFVSGGIQQGNKIDKDDPASLNLNLGGEKKPKEDDEGSIQIDFDKRTKKAPKQNGAQVFAGMRSSANHGAADINQFGSWMRGDGNSNKIMKMMQAMGYKPGEGLGAQGQGIVEPVQAQLRKGRGAVGAYGKESTATGPKFGESAADAQKRMAQEGTSSRPTNDDQEKSGLKIKGSWKKSQTVKTKYRTIEDVMEEGMSASRPASHQQSQQYSNIKVIDMTGKQQKIYSGYDSFSMKTRSEYDTVDDEERTVFDVPELIHNLNLLVDLTEEGIRRSNQQLISLKDQTTALEYDLQQVQKSLGTEEQEAQHIKDVYELIDGFSSNRSPSMEECQELFRRLRSEFPHEYELYSLETVAIPTVLPLIQKYFVAWKPLEDKNYGCELISTWRDILDDSKNGRKMTFGHNKTKGDEIRAYDRIIWEGILPSIRRACLQWDPSTQMHEMIELVEQWIPLLSAWITENILEQLVVPKIAERVNQWDPMTDEIPIHEWLVPWLVLLGDRIQTVMPPIRQKLSKALKLWDPMDRSALETLRPWQNVWSAATFSAFIAQNIVPKLGVALDTMELNPTMNPEYPEWTACMEWLEFTHPDAIANIVTKYFFPRFYNCLCLWLDSPGVDYNEVKRWYGSWKARIPQVLVNYPTVNENLRRSMIAIGRSLQGEKVGGLQATPIAPMAPPPPMAPHFTQAAPVQKLSLKEIIEYTAGKNGFTYHPQKDRYKDGRQVFWFGALSIYLDSEMVYVMDPIEFVWRPSGLNELIQMAQGAQG |
| WD_REPEATS_REGION domain-containing protein | W | 567 | Human Herpesvirus 6B (Strain Hst) | MDALQAYGGSDSEHSDDDASMDQVAKGKSSTLLERAIVTAPDVESKSAIRQVAIVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQQRSQKNTLTGFVEPAHLNEFHFNRQIRSFDTLGYAQNPTAESGTTHFVGDVKKAEAEKGVSLFESKKTGGEKRKRVRNDDSADIDGYTGPWSRFIDEKTVAKPTPELQKQMDEIVKKRQEKSRRFKKEKEDSEQMAEESSTLHLKEAEDYQGRSFLVPPSFTGVNLREDYVPERCFVPKKLVHTYRGHNKGVNFLQWFPKSAHLFLSCSMDTKIKLWEVYDRQRVVRTYAGHKLPVREVAFNNEGTEFLSASFDRYVKLWDTETGQVKQRFHTGHVPYCLKYHPDDDKNHMFLVGMQNKKIIQWDSRSGEIVQEYDRHLQAVNSITFFDKNRRFASTSDDKSVRIWEWEIPVDTKLIQNVGLHAIPTMTKSPNDKWVVGQCMDNRIVLFQLVDDKLRFSKKKAFRGHNAAGYACNIDFSPDQSFLISGDADGKLFIWDWRTHKIVGKWKAHDSTCIAALWHPHEKSRMITAGWDGLIKMWN |
| Replication stress response regulator SDE2 | X | 500 | Human Herpesvirus 6B (Strain Hst) | MSATKHNERVGRRNDRKRDASQACLPERSPSLRSEPRQQRSHPYLQTRTNTHRQRPMIRPSSVVSMSGRSIAPSDSSENDDRHFDVDEEMESMSLDSPLPIEVPARPFPDKPYYWMNDYKTLEFIRTNFPSDSFYVMHNGKIIENFNAFIDENMGQSLVKYSFHLRVRGGKGGFGSLLRSFRVNKSTNKLMMRDLNGRRMASVDEEAKLKRYLEKQARKEQELKEKRKAKLEKLTAGPAKHMFEDQDYLSRREEIINKTEDACEAGFALMLEMKRNSRKSKEQENKNDEDEDDDVNAEDVTDLFNDRGGRKRKIAAPSIGEDGGNKRINDESDDSEDDSENEVDPEELEAIRQYFEAKKQDEKDNGEGTSEAVPEVLVDEQEIEPAKRPRLDSASNIDDLPKIDVKTPCEYGPISLDDFTSAEDLELLGLEHLKSALNDRGLKCGGSLVERAARLWCVKGKQPREYPKNILTPELKKKIAEEEEAERKAAKKAKKSKKNQ |
| Coiled-coil domain-containing protein 12 | Z | 69 | Human Herpesvirus 6B (Strain Hst) | MDLDIVQREITEHLKDVLHEKAIDSVDLAMLAPKKIDWDLKRDIESKLQKLERRTQKAVATIIRQRLAE |
| Pre-mRNA-splicing factor 8 homolog | A | 2329 | Human Herpesvirus 6B (Strain Hst) | MANYGGHPQTEPHAIPDSILEEKSRKWKQLQGKRYSEKKKFGMSDTQKEEMPPEHVRKVIRDHGDMTSRKYRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVKVLYHITGAITFVNDIPRVIEPVYMAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEPIQMELDPEEDGAVAEWFYDHKPLATTRFVNGPTYRKWAFSIPQMSTLYRLANQLLTDLVDDNYFYLFDMKSFFTAKALNVAIPGGPKFEPLVKDLHTDEDWNEFNDINKVIIRAPIRTEYRIAFPFMYNNLISSLPVQVSWYHTPSVVFIKTEDPDLPAFYYDPLINPIVLSNLKATEENLPEGEEEDEWELPEDVRPIFEDVPLYTDNTANGLALLWAPRPFNLRSGRTRRAVDVPLVKSWYREHCPAGMPVKVRVSYQKLLKVFVLNALKHRPPKPQKRRYLFRSFKATKFFQTTTLDWVEAGLQVLRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDAHVQYRLNNVDAYQLADGLQYIFAHVGQLTGMYRYKYKLMRQVRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFLRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPDGIKQNKARVILQHLSEAWRCWKANIPWKVPGLPTPVENMILRYVKAKADWWTNSAHYNRERVRRGATVDKTVCKKNLGRLTRLYLKSEQERQHNYLKDGPYISAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKESYSVKNRLNQSQREELALIEQAYDNPHEALSRIKRHMLTQRAFKEVGIEFMDLYTHLIPVYDIEPLEKVTDAYLDQYLWYEADKRRLFPAWVKPGDTEPPPLLTYKWCQGLNNLQDVWETSEGECNVIMETKLEKIAEKMDLTLLNRLLRLIVDHNIADYMTSKNNVLINYKDMNHTNSFGIIRGLQFASFIVQFYGLVLDLLVLGLRRASEIAGPPQCPNEFLQFQDVATEIGHPIRLYCRYIDRVWIMFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSITTVEWENSFVSVYSKDNPNMLFDMSGFECRILPKCRTANEEFVHRDGVWNLQNEVTKERTAQCFLKVDEESLSKFHNRIRQILMSSGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKEIGGLGMLSMGHVLIPQSDLRWMQQTEAGGVTHFRSGMSHDEDQLIPNLYRYIQPWEAEFVDSVRVWAEYALKRQEANAQNRRLTLEDLDDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKAYQILKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFRGTYFPTWEGLFWERASGFEESMKFKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIQTVQKETIHPRKSYKMNSSCADVLLFAQYKWNVSRPSLMADSKDVMDNTTTQKYWLDVQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLYSAYGNWFPGMKPLIRQAMAKIIKANPAFYVLRERIRKGLQLYSSEPTEPYLTSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLSQLAKWKTAEEVAALIRSLPVEEQPRQIIVTRKAMLDPLEVHLLDFPNIVIKGSELMLPFQAIMKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRVVLIMRGMHINPDKTKVILKPDKTTITEPHHIWPTLSDDDWIKVELALKDMILADYGKKNNVNVASLTQSEVRDIILGMEISAPSQQRQQIADIEKQTKEQSQVTATTTRTVNKHGDEIITATTSNYETASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGTGSADREDAFA |
| Small nuclear ribonucleoprotein Sm D3 | H | 136 | Human Herpesvirus 6B (Strain Hst) | MTSVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGGLDQRGRGRGTAFRRPMGRGGPRGMSRPGGAPTFRG |
| Probable small nuclear ribonucleoprotein-associated protein B | B | 160 | Human Herpesvirus 6B (Strain Hst) | MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGEHIVSMTVDGPPPRDDDSVRLAKAGGAGGVGQAKPGGRGMPAMPGMPGMPPGGAPGGLSGAMRGHGGPGMAAMQPGYGGPPGGRPF |
| Pre-mRNA-splicing factor SYF1 | I | 855 | Human Herpesvirus 6B (Strain Hst) | MADKENATKIEKMPNSETMKGISSEDVPFEEDIIRNPTSVNCWQRYIDHKLQNKSPAKQMFLIYERALAVFERSYKLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRSLPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYLKMNPKAREDYVEYLIERDQIDEAAKELTTLVNQDQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNVDAIIRQGIYRYTDQVGFLWCSLADYYIRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAAFEEREVSIMMQEVEQSGDPEEEVDLEWMFQRYQHLMERKNELMNSVLLRQNPHNVGEWLNRVNIYEGNYNKQIETFKEAVKSVNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVMQRACVVPKPGDYENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAFQAYEKGIALFKWPGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLARHALSIYNRACSGVDRADMHSMYNIYIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVKFWDTWKNFEVAHGNEATVRDMLRVRRSVEASYNVNVTLTSVQMRVDAERKAQETTTSSNPMDSLDQQQQQPSDGAGSITQVSMNKGNISFVRGAGKTVQQNTTENPDEIDLDEDDDDEEDDGGDADISVKVVPAQIFGNLKLAEEEEEA |
| Tr-type G domain-containing protein | C | 974 | Human Herpesvirus 6B (Strain Hst) | MDSDLYDEFGNYIGPELDSDDDAGDIDDNGDDEDRSDVDEDDEPDRMEEDDAEEIPQNQVVLHEDKKYYATALEVYGEGVETLVQEEDAQPLTEPIVKPVSKKKFQAAERFLPETVYKKEYLADLMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILSTFAEEDVPVLSPLNGNVIFSSGRYNVCFSLLSFSNIYAKQHGDSFNSKEFARRLWGDIYFEKKTRKFVKKSPSHDAPRTFVQFILEPMYKIFSQVVGDVDTCLPDVMAELGIRLSKEEQKMNVRPLIALICKRFFGDFSAFVDLVVQNIKSPLENAKTKIEQTYLGPADSQLAQEMQKCNAEGPLMVHTTKNYPVDDATQFHVFGRVMSGTLEANTDVRVLGENYSIQDEEDCRRMTVGRLFVRVASYQIEVSRVPAGCWVLIEGIDQPIVKTATIAELGYEEDVYIFRPLKFNTRSCVKLAVEPINPSELPKMLDGLRKVNKSYPLLTTRVEESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFNETVIETSTLKCFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIWAFGPDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSEDVSVNKFFDDPMLLELAKQQDYTGF |
| Protein isy-1 | D | 267 | Human Herpesvirus 6B (Strain Hst) | MARNAEKAMTALARWRRMKEEEERGPIARRPHDVKDCRNLSDAERFRREIVRDASKKITAIQNPGLGEFKLRDLNDEVNRLIKLKHAWEQRIRELGGTDYRKYAQKELDAIGRETGNSRGYKYFGAAKDLPGVRELFEKSTEGEEQRRHRADLLRNIDAHYFGYLDDEDGRLIPLEKLIEEKNIERINKEFAEKQAQKQQTASDAAPENIYKVEEDDDDDLETQESTVIGEDGRPMTIRHVLLPTQQDIEEMLLEQKKQELMAKYLD |
| WD_REPEATS_REGION domain-containing protein | E | 331 | Human Herpesvirus 6B (Strain Hst) | MALVTSSGQQLVSSGFPQQTAQRFSNLMAPTMVLLGHEGEIYTGAFSPDGTCLATSGYDQKIFFWNVYGECENFSTIKGHSGAVMDLKFTTDSSSLVSCGTDKSVRVWDMETGTCARRFRTHTDFVNAVHPSRRGVTLVASASDDGTCRVHDMRTKEPVKTYTNRYQQTAVTFNDSSDQVISGGIDNVLKVWDMRRDEITYTLTGHRDTITGISLSPSGKFIISNSMDCTVRQWDIRPFVPGQRSVGVFAGHNHNFEKNLLKCSWSPCERFITAGSSDRFLYVWETLSKKIVYKLPGHMGSVNCTDFHPKEPIMLSCGSDKRVFLGEIDMS |
| Probable small nuclear ribonucleoprotein F | F | 85 | Human Herpesvirus 6B (Strain Hst) | MSAVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNVLYVGGVDGENETSA |
| Probable small nuclear ribonucleoprotein G | G | 77 | Human Herpesvirus 6B (Strain Hst) | MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNSVVIMEPKERIS |
| Peptidyl-prolyl cis-trans isomerase E | Y | 79 | Human Herpesvirus 6B (Strain Hst) | KRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFAR |
| Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 | DX | 739 | Human Herpesvirus 6B (Strain Hst) | MSSRHRLDLDGSGRGDRRRSPNRRSRSRSRSPHRRSSPDRKRQIGAVGNMKIQINPYNNQPFSNRYWAIWEKRSQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQIPQWAVEFMKQQQQGQPPGQARLVACTQPRRVAAMSVATRVAEEMDVVLGQEVGYSIRFEDCISERTVLKYCTDGMLLREAMNSPLLDKYKVLILDEAHERTLATDILMGLIKEIVRNRADIKVVIMSATLDAGKFQRYFEDCPLLSVPGRTFPVEIFFTPNAEKDYLEAAIRTVIQIHMVEEVEGDILLFLTGQEEIEEACKRIDREIQALGADAGALSCIPLYSTLPPAAQQRIFEPAPPNRPNGAISRKCVISTNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVCPISKASAMQRAGRAGRTKPGKCFRLYTETAYGSEMQDQTYPEILRSNLGSVVLQLKKLGTEDLVHFDFMDPPAPETLMRALELLNYLQAINDDGELTELGSLMAEFPLDPQLAKMLITSTELNCSNEILSITAMLSVPQCWVRPNEMRTEADEAKARFAHIDGDHLTLLNVYHSFKQNQEDPQWCYDNFINYRTMKTADTVRTQLSRVMDKYNLRRVSTDFKSRDYYLNIRKALVAGFFMQVAHLERSGHYVTVKDNQLVNLHPSTVLDHKPEWALYNEFVLTTKNFIRTVTDVRPEWLLQIAPQYYDLDNFPDGDTKRKLTTVMQTLQRNAGRGY |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-01-11 Deposition Author(s): Plaschka, C. , Rothe, P. , Vorlaender, M.K.