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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8RK3

Bacteriophage jbd30 baseplate - composite structure

PDB DOI: 10.2210/pdb8rk3/pdb

Classification: VIRUS
Organism(s): Pseudomonas Phage Jbd30

Deposited: 2023-12-23
Deposition Author(s): Fuzik, T. , Plevka, P. , Valentova, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.46 Å

Literature

Bacteriophage jbd30 baseplate - composite structure

Fuzik, T. , Plevka, P. , Valentova, L.

Primary Citation of Related Structures: 8RK3


Proteins
Molecule Chains Sequence Length Organism Sequence
DUF2793 domain-containing protein A 382 Pseudomonas Phage Jbd30 MTLYMGPNTGLLINGLPGEGHYSDLIRMWRWDDFLRQPVVKGRVATLPTTGQAEGDTYIFTGSGSNQNRLARWWATGATTAIWEYMPPRLGWRVQVANETTPSGQVKTYEYSGTAWVELVGGMSDAPSDGKAYARESGAWTELGSAAKSALNVLPFMNLMPDMGRFAGTAANPLATMFTTSWTPSSFLNGWNGATVADGGKFAFDNSTNGGAGPALNARVQALLAAMGRTWTSVSRYGVEFFTAVLTAGSQTTTGSAGADGVTRYLCCSNGSKTVFNAGGWATVVMWLRVESGSAHISSAPYTTHRLWINGAVAAPGVVLPANQWVHLRFSMQSYNGYDNACPYIYASAGAQIAFACPAWFGGLVDPGIHVAPILTINGASA
Tip attachment protein J domain-containing protein B 735 Pseudomonas Phage Jbd30 MGAKPKAQTVGWRYYFDIHFALGKKVDEVCAIRASGKTAWKGSITSNGQVRINAPELFGGDKGEGGLDGTLDVLFGEEDQGVLPRLAAMLGGLVPAFRGVTTCFYSGLVTSVNPYPKKWEILRRGGNRLWDGNPWYPEKQFVWLADGQIKAMNPAHILYLVYTGRDFRGLARTRMDEASWRAAADTLYAEGFGLCFEWTRSDSFKNFCETVKSHIGAEVYPNRQTGQISIRLLRDDYNVADLPLFDEDSGLLEITQEKTGSTSLAPSQLIVKYIDQIDGAQRQIIVNNNAVAASQGRRSSEEIEFLGVPTGELAGRVGEREMRLKTTGLKRYKGVFDRRARSLNPGQPFLIRSTPRGIPETVVRVGRIEDNFLGDGKITLTVVQDQFNLPATTGVAPPPPGWTPPDRTPRAITVRRLIEAPYRELAGVIDPANLQLLDVSASYLAALAEAPTSLSQSYTLTDRVGSSGAFVDRGTGDWCPTGLLAAELPLAAGPNVVTLTNATRLEDVTVGQAAVVDDEIVRVDAVNYASGTVTLARGCADTVPAKHLAGARVWFYDTFEAVDETVYSQGVTLQARLLTNTSEGQLAPALAATDSLTLTGRQGKPYPPGQFRINGSAYPTKVYGALSVSWAKRDRIGQADQLIDTTVGNIGPEDGATVTLQVYSGTTLKRTYAGLTSSSWSYPLAEDMADGPLQDVRLVLRSVRDGIDSWQQHDITIERHGLGFRLGEELGGVSA
Virion structural protein C 318 Pseudomonas Phage Jbd30 MATEFGTAVNHADLVERLVQFLTASPDLVAAGQAYEKVFDNTIPASGTAIAVRQVTLRAPGLGGTDAIYMGIQSYGDTALDYYNLRLMGGTAFNPGAIPPGGDYWTAFANYSPRVQLLAWNQPMPYWFFANGRRFWIVVKVSTIYESAGAGFILPPCPPSQYPYPLAVVGSYRGDVATRWSDVSDRHRGISSPYERSCYLRDPAGRWLGFTVDGGAANESDYNNRTLLPLGCGRYAGSSDTVVKQLRDSFGKFPLKALQFVTRETEGRRYLGDFDGAFYVPTLNSGAEDVIVEDGVDHVVFQTAWRSGNPWLYAIRKD
Virion structural protein G 307 Pseudomonas Phage Jbd30 MAYFTGTANNPADLLAKVRVHAESLGWVTDRASASEWLCHNADGYWSFNAGANQFQMAGNTGFDNSLAWNAQPGNSVQNNPYSSKGPTVAQLSGGPFTRYHLFATAAYLHLHVEIAAGQFRPVMIGSLNKRGVGYTGGQYVCGSFIYTPGQALTNNWSSHPFDGYHIQYSNSSCMLRLDGLDGGPSPEWLPFDYTTNVPRRVVGPGRGNYSSQYHPDVGLIDASANELNSSTTTVPCAIYAFGAQQRSRYVGEVPDFGICNMAFLAPGDPLVVGSDTWRVYPLLQRGTATDFDSTSAWVGYCFRVVE
Tip attachment protein J domain-containing protein O 735 Pseudomonas Phage Jbd30 MGAKPKAQTVGWRYYFDIHFALGKKVDEVCAIRASGKTAWKGSITSNGQVRINAPELFGGDKGEGGLDGTLDVLFGEEDQGVLPRLAAMLGGLVPAFRGVTTCFYSGLVTSVNPYPKKWEILRRGGNRLWDGNPWYPEKQFVWLADGQIKAMNPAHILYLVYTGRDFRGLARTRMDEASWRAAADTLYAEGFGLCFEWTRSDSFKNFCETVKSHIGAEVYPNRQTGQISIRLLRDDYNVADLPLFDEDSGLLEITQEKTGSTSLAPSQLIVKYIDQIDGAQRQIIVNNNAVAASQGRRSSEEIEFLGVPTGELAGRVGEREMRLKTTGLKRYKGVFDRRARSLNPGQPFLIRSTPRGIPETVVRVGRIEDNFLGDGKITLTVVQDQFNLPATTGVAPPPPGWTPPDRTPRAITVRRLIEAPYRELAGVIDPANLQLLDVSASYLAALAEAPTSLSQSYTLTDRVGSSGAFVDRGTGDWCPTGLLAAELPLAAGPNVVTLTNATRLEDVTVGQAAVVDDEIVRVDAVNYASGTVTLARGCADTVPAKHLAGARVWFYDTFEAVDETVYSQGVTLQARLLTNTSEGQLAPALAATDSLTLTGRQGKPYPPGQFRINGSAYPTKVYGALSVSWAKRDRIGQADQLIDTTVGNIGPEDGATVTLQVYSGTTLKRTYAGLTSSSWSYPLAEDMADGPLQDVRLVLRSVRDGIDSWQQHDITIERHGLGFRLGEELGGVSA
Virion structural protein P 307 Pseudomonas Phage Jbd30 MAYFTGTANNPADLLAKVRVHAESLGWVTDRASASEWLCHNADGYWSFNAGANQFQMAGNTGFDNSLAWNAQPGNSVQNNPYSSKGPTVAQLSGGPFTRYHLFATAAYLHLHVEIAAGQFRPVMIGSLNKRGVGYTGGQYVCGSFIYTPGQALTNNWSSHPFDGYHIQYSNSSCMLRLDGLDGGPSPEWLPFDYTTNVPRRVVGPGRGNYSSQYHPDVGLIDASANELNSSTTTVPCAIYAFGAQQRSRYVGEVPDFGICNMAFLAPGDPLVVGSDTWRVYPLLQRGTATDFDSTSAWVGYCFRVVE
Virion structural protein U 567 Pseudomonas Phage Jbd30 MATFPGFQVPKPVEGIVAGITPNIDALELNQDISLAAVAASTWGGAYGAHQPVEVIHSTYQAVHQSALEENYYNRLWLIPTAMELGNVVSTQIRPASVWNAYFSPRTLTAIDREAADGITLSGQASPPLGFAALEERTWTVSIGTDGPPVVNARIVWRLQGEPNLVLVITGNRIIAWTFAPDWGDSIVERLSASTNILQSESAVTQRRAMRLAPRREFDANMYAVDRERQLLDMTLFGWGARIWALPIWPDIQLLHQPLAAGSLGIPCDTAGLDFRDGGLAMLRGEDAFTYEVVEVKTVTASGLDLVRPVQAAWGTGSRLYPVRTAQLTEQPTLTRLTDTAQSARVSFLVMEPSAWPELMPATTYRGRPVLEQRPDESEDLTSSYQRLLSTLDNGSAIPRVTDVAGMALPVIGHRWIGMGRAERSAFRSLVYALRGQQKPLWVPTHADDLTLVATVSQLSTALDVRNIGYARFANGRPGRRDIRIELYDGTVYHRRILTSTELDADTERVAIDAALGRLVEPTDVARICFMALCSAASDVVEIEHVTDSEGVATAALTFKGVRDDEF
Virion structural protein R 318 Pseudomonas Phage Jbd30 MATEFGTAVNHADLVERLVQFLTASPDLVAAGQAYEKVFDNTIPASGTAIAVRQVTLRAPGLGGTDAIYMGIQSYGDTALDYYNLRLMGGTAFNPGAIPPGGDYWTAFANYSPRVQLLAWNQPMPYWFFANGRRFWIVVKVSTIYESAGAGFILPPCPPSQYPYPLAVVGSYRGDVATRWSDVSDRHRGISSPYERSCYLRDPAGRWLGFTVDGGAANESDYNNRTLLPLGCGRYAGSSDTVVKQLRDSFGKFPLKALQFVTRETEGRRYLGDFDGAFYVPTLNSGAEDVIVEDGVDHVVFQTAWRSGNPWLYAIRKD
Tip attachment protein J domain-containing protein D 735 Pseudomonas Phage Jbd30 MGAKPKAQTVGWRYYFDIHFALGKKVDEVCAIRASGKTAWKGSITSNGQVRINAPELFGGDKGEGGLDGTLDVLFGEEDQGVLPRLAAMLGGLVPAFRGVTTCFYSGLVTSVNPYPKKWEILRRGGNRLWDGNPWYPEKQFVWLADGQIKAMNPAHILYLVYTGRDFRGLARTRMDEASWRAAADTLYAEGFGLCFEWTRSDSFKNFCETVKSHIGAEVYPNRQTGQISIRLLRDDYNVADLPLFDEDSGLLEITQEKTGSTSLAPSQLIVKYIDQIDGAQRQIIVNNNAVAASQGRRSSEEIEFLGVPTGELAGRVGEREMRLKTTGLKRYKGVFDRRARSLNPGQPFLIRSTPRGIPETVVRVGRIEDNFLGDGKITLTVVQDQFNLPATTGVAPPPPGWTPPDRTPRAITVRRLIEAPYRELAGVIDPANLQLLDVSASYLAALAEAPTSLSQSYTLTDRVGSSGAFVDRGTGDWCPTGLLAAELPLAAGPNVVTLTNATRLEDVTVGQAAVVDDEIVRVDAVNYASGTVTLARGCADTVPAKHLAGARVWFYDTFEAVDETVYSQGVTLQARLLTNTSEGQLAPALAATDSLTLTGRQGKPYPPGQFRINGSAYPTKVYGALSVSWAKRDRIGQADQLIDTTVGNIGPEDGATVTLQVYSGTTLKRTYAGLTSSSWSYPLAEDMADGPLQDVRLVLRSVRDGIDSWQQHDITIERHGLGFRLGEELGGVSA
DUF2793 domain-containing protein W 382 Pseudomonas Phage Jbd30 MTLYMGPNTGLLINGLPGEGHYSDLIRMWRWDDFLRQPVVKGRVATLPTTGQAEGDTYIFTGSGSNQNRLARWWATGATTAIWEYMPPRLGWRVQVANETTPSGQVKTYEYSGTAWVELVGGMSDAPSDGKAYARESGAWTELGSAAKSALNVLPFMNLMPDMGRFAGTAANPLATMFTTSWTPSSFLNGWNGATVADGGKFAFDNSTNGGAGPALNARVQALLAAMGRTWTSVSRYGVEFFTAVLTAGSQTTTGSAGADGVTRYLCCSNGSKTVFNAGGWATVVMWLRVESGSAHISSAPYTTHRLWINGAVAAPGVVLPANQWVHLRFSMQSYNGYDNACPYIYASAGAQIAFACPAWFGGLVDPGIHVAPILTINGASA
DUF2793 domain-containing protein E 382 Pseudomonas Phage Jbd30 MTLYMGPNTGLLINGLPGEGHYSDLIRMWRWDDFLRQPVVKGRVATLPTTGQAEGDTYIFTGSGSNQNRLARWWATGATTAIWEYMPPRLGWRVQVANETTPSGQVKTYEYSGTAWVELVGGMSDAPSDGKAYARESGAWTELGSAAKSALNVLPFMNLMPDMGRFAGTAANPLATMFTTSWTPSSFLNGWNGATVADGGKFAFDNSTNGGAGPALNARVQALLAAMGRTWTSVSRYGVEFFTAVLTAGSQTTTGSAGADGVTRYLCCSNGSKTVFNAGGWATVVMWLRVESGSAHISSAPYTTHRLWINGAVAAPGVVLPANQWVHLRFSMQSYNGYDNACPYIYASAGAQIAFACPAWFGGLVDPGIHVAPILTINGASA
Virion structural protein I 318 Pseudomonas Phage Jbd30 MATEFGTAVNHADLVERLVQFLTASPDLVAAGQAYEKVFDNTIPASGTAIAVRQVTLRAPGLGGTDAIYMGIQSYGDTALDYYNLRLMGGTAFNPGAIPPGGDYWTAFANYSPRVQLLAWNQPMPYWFFANGRRFWIVVKVSTIYESAGAGFILPPCPPSQYPYPLAVVGSYRGDVATRWSDVSDRHRGISSPYERSCYLRDPAGRWLGFTVDGGAANESDYNNRTLLPLGCGRYAGSSDTVVKQLRDSFGKFPLKALQFVTRETEGRRYLGDFDGAFYVPTLNSGAEDVIVEDGVDHVVFQTAWRSGNPWLYAIRKD
Virion structural protein M 307 Pseudomonas Phage Jbd30 MAYFTGTANNPADLLAKVRVHAESLGWVTDRASASEWLCHNADGYWSFNAGANQFQMAGNTGFDNSLAWNAQPGNSVQNNPYSSKGPTVAQLSGGPFTRYHLFATAAYLHLHVEIAAGQFRPVMIGSLNKRGVGYTGGQYVCGSFIYTPGQALTNNWSSHPFDGYHIQYSNSSCMLRLDGLDGGPSPEWLPFDYTTNVPRRVVGPGRGNYSSQYHPDVGLIDASANELNSSTTTVPCAIYAFGAQQRSRYVGEVPDFGICNMAFLAPGDPLVVGSDTWRVYPLLQRGTATDFDSTSAWVGYCFRVVE
Virion structural protein J 256 Pseudomonas Phage Jbd30 MAQETYFYGQGEIDAAPIVNGVLGKWRWIQDVSAMSIQLAVEKVEHKESYSGQKALVRSFPIGKTATVNITLHSIGPDNLALTLYGKVVAKAAGSVTGEVLPADLVAGDVIRLANFGVSELVITDSASSPAPLDPQYYALRADGAYGEVQLLGLPTPAPTQPFKAAYEYAATKQVGMFTAPQPTVALRYKGINLAEGGAPVIVELYKVATDPLQELALISDGNTVAGMQISGGILLDTSKPDTGDLGRFGRIIQLG
Virion structural protein F 256 Pseudomonas Phage Jbd30 MAQETYFYGQGEIDAAPIVNGVLGKWRWIQDVSAMSIQLAVEKVEHKESYSGQKALVRSFPIGKTATVNITLHSIGPDNLALTLYGKVVAKAAGSVTGEVLPADLVAGDVIRLANFGVSELVITDSASSPAPLDPQYYALRADGAYGEVQLLGLPTPAPTQPFKAAYEYAATKQVGMFTAPQPTVALRYKGINLAEGGAPVIVELYKVATDPLQELALISDGNTVAGMQISGGILLDTSKPDTGDLGRFGRIIQLG
Virion structural protein N 307 Pseudomonas Phage Jbd30 MAYFTGTANNPADLLAKVRVHAESLGWVTDRASASEWLCHNADGYWSFNAGANQFQMAGNTGFDNSLAWNAQPGNSVQNNPYSSKGPTVAQLSGGPFTRYHLFATAAYLHLHVEIAAGQFRPVMIGSLNKRGVGYTGGQYVCGSFIYTPGQALTNNWSSHPFDGYHIQYSNSSCMLRLDGLDGGPSPEWLPFDYTTNVPRRVVGPGRGNYSSQYHPDVGLIDASANELNSSTTTVPCAIYAFGAQQRSRYVGEVPDFGICNMAFLAPGDPLVVGSDTWRVYPLLQRGTATDFDSTSAWVGYCFRVVE
Virion structural protein K 318 Pseudomonas Phage Jbd30 MATEFGTAVNHADLVERLVQFLTASPDLVAAGQAYEKVFDNTIPASGTAIAVRQVTLRAPGLGGTDAIYMGIQSYGDTALDYYNLRLMGGTAFNPGAIPPGGDYWTAFANYSPRVQLLAWNQPMPYWFFANGRRFWIVVKVSTIYESAGAGFILPPCPPSQYPYPLAVVGSYRGDVATRWSDVSDRHRGISSPYERSCYLRDPAGRWLGFTVDGGAANESDYNNRTLLPLGCGRYAGSSDTVVKQLRDSFGKFPLKALQFVTRETEGRRYLGDFDGAFYVPTLNSGAEDVIVEDGVDHVVFQTAWRSGNPWLYAIRKD
Virion structural protein Q 256 Pseudomonas Phage Jbd30 MAQETYFYGQGEIDAAPIVNGVLGKWRWIQDVSAMSIQLAVEKVEHKESYSGQKALVRSFPIGKTATVNITLHSIGPDNLALTLYGKVVAKAAGSVTGEVLPADLVAGDVIRLANFGVSELVITDSASSPAPLDPQYYALRADGAYGEVQLLGLPTPAPTQPFKAAYEYAATKQVGMFTAPQPTVALRYKGINLAEGGAPVIVELYKVATDPLQELALISDGNTVAGMQISGGILLDTSKPDTGDLGRFGRIIQLG
Virion structural protein T 318 Pseudomonas Phage Jbd30 MATEFGTAVNHADLVERLVQFLTASPDLVAAGQAYEKVFDNTIPASGTAIAVRQVTLRAPGLGGTDAIYMGIQSYGDTALDYYNLRLMGGTAFNPGAIPPGGDYWTAFANYSPRVQLLAWNQPMPYWFFANGRRFWIVVKVSTIYESAGAGFILPPCPPSQYPYPLAVVGSYRGDVATRWSDVSDRHRGISSPYERSCYLRDPAGRWLGFTVDGGAANESDYNNRTLLPLGCGRYAGSSDTVVKQLRDSFGKFPLKALQFVTRETEGRRYLGDFDGAFYVPTLNSGAEDVIVEDGVDHVVFQTAWRSGNPWLYAIRKD
Virion structural protein L 256 Pseudomonas Phage Jbd30 MAQETYFYGQGEIDAAPIVNGVLGKWRWIQDVSAMSIQLAVEKVEHKESYSGQKALVRSFPIGKTATVNITLHSIGPDNLALTLYGKVVAKAAGSVTGEVLPADLVAGDVIRLANFGVSELVITDSASSPAPLDPQYYALRADGAYGEVQLLGLPTPAPTQPFKAAYEYAATKQVGMFTAPQPTVALRYKGINLAEGGAPVIVELYKVATDPLQELALISDGNTVAGMQISGGILLDTSKPDTGDLGRFGRIIQLG
Virion structural protein V 318 Pseudomonas Phage Jbd30 MATEFGTAVNHADLVERLVQFLTASPDLVAAGQAYEKVFDNTIPASGTAIAVRQVTLRAPGLGGTDAIYMGIQSYGDTALDYYNLRLMGGTAFNPGAIPPGGDYWTAFANYSPRVQLLAWNQPMPYWFFANGRRFWIVVKVSTIYESAGAGFILPPCPPSQYPYPLAVVGSYRGDVATRWSDVSDRHRGISSPYERSCYLRDPAGRWLGFTVDGGAANESDYNNRTLLPLGCGRYAGSSDTVVKQLRDSFGKFPLKALQFVTRETEGRRYLGDFDGAFYVPTLNSGAEDVIVEDGVDHVVFQTAWRSGNPWLYAIRKD
Virion structural protein S 256 Pseudomonas Phage Jbd30 MAQETYFYGQGEIDAAPIVNGVLGKWRWIQDVSAMSIQLAVEKVEHKESYSGQKALVRSFPIGKTATVNITLHSIGPDNLALTLYGKVVAKAAGSVTGEVLPADLVAGDVIRLANFGVSELVITDSASSPAPLDPQYYALRADGAYGEVQLLGLPTPAPTQPFKAAYEYAATKQVGMFTAPQPTVALRYKGINLAEGGAPVIVELYKVATDPLQELALISDGNTVAGMQISGGILLDTSKPDTGDLGRFGRIIQLG
Virion structural protein Y 307 Pseudomonas Phage Jbd30 MAYFTGTANNPADLLAKVRVHAESLGWVTDRASASEWLCHNADGYWSFNAGANQFQMAGNTGFDNSLAWNAQPGNSVQNNPYSSKGPTVAQLSGGPFTRYHLFATAAYLHLHVEIAAGQFRPVMIGSLNKRGVGYTGGQYVCGSFIYTPGQALTNNWSSHPFDGYHIQYSNSSCMLRLDGLDGGPSPEWLPFDYTTNVPRRVVGPGRGNYSSQYHPDVGLIDASANELNSSTTTVPCAIYAFGAQQRSRYVGEVPDFGICNMAFLAPGDPLVVGSDTWRVYPLLQRGTATDFDSTSAWVGYCFRVVE
Virion structural protein X 307 Pseudomonas Phage Jbd30 MAYFTGTANNPADLLAKVRVHAESLGWVTDRASASEWLCHNADGYWSFNAGANQFQMAGNTGFDNSLAWNAQPGNSVQNNPYSSKGPTVAQLSGGPFTRYHLFATAAYLHLHVEIAAGQFRPVMIGSLNKRGVGYTGGQYVCGSFIYTPGQALTNNWSSHPFDGYHIQYSNSSCMLRLDGLDGGPSPEWLPFDYTTNVPRRVVGPGRGNYSSQYHPDVGLIDASANELNSSTTTVPCAIYAFGAQQRSRYVGEVPDFGICNMAFLAPGDPLVVGSDTWRVYPLLQRGTATDFDSTSAWVGYCFRVVE
Virion structural protein H 256 Pseudomonas Phage Jbd30 MAQETYFYGQGEIDAAPIVNGVLGKWRWIQDVSAMSIQLAVEKVEHKESYSGQKALVRSFPIGKTATVNITLHSIGPDNLALTLYGKVVAKAAGSVTGEVLPADLVAGDVIRLANFGVSELVITDSASSPAPLDPQYYALRADGAYGEVQLLGLPTPAPTQPFKAAYEYAATKQVGMFTAPQPTVALRYKGINLAEGGAPVIVELYKVATDPLQELALISDGNTVAGMQISGGILLDTSKPDTGDLGRFGRIIQLG
Virion structural protein Z 307 Pseudomonas Phage Jbd30 MAYFTGTANNPADLLAKVRVHAESLGWVTDRASASEWLCHNADGYWSFNAGANQFQMAGNTGFDNSLAWNAQPGNSVQNNPYSSKGPTVAQLSGGPFTRYHLFATAAYLHLHVEIAAGQFRPVMIGSLNKRGVGYTGGQYVCGSFIYTPGQALTNNWSSHPFDGYHIQYSNSSCMLRLDGLDGGPSPEWLPFDYTTNVPRRVVGPGRGNYSSQYHPDVGLIDASANELNSSTTTVPCAIYAFGAQQRSRYVGEVPDFGICNMAFLAPGDPLVVGSDTWRVYPLLQRGTATDFDSTSAWVGYCFRVVE
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-12-23
Deposition Author(s): Fuzik, T. , Plevka, P. , Valentova, L.