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8RJ7

The crystal structure of the sars-cov-2 receptor binding domain in complex with the neutralizing nanobody 1.29

PDB DOI: 10.2210/pdb8rj7/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2023-12-20
Deposition Author(s): Casasnovas, J.M. , Fernandez, L.A. , Silva, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.1 Å

8rj7
Literature

The crystal structure of the sars-cov-2 receptor binding domain in complex with the neutralizing nanobody 1.29

Casasnovas, J.M. , Fernandez, L.A. , Silva, K.

Primary Citation of Related Structures: 8RJ7


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 203 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 GSITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKLVPR
Spike protein S1 C 203 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 GSITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKLVPR
Spike protein S1 E 203 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 GSITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKLVPR
Spike protein S1 G 203 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 GSITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKLVPR
Spike protein S1 I 203 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 GSITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKLVPR
Camel-derived nanobody 1.29 B 126 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGSVQAGGSLRLSCAASGYTINTDAVAWFRQAPGKGDERVAVIYTGSGNTNYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTALYYCASGYYGASGYDFNNWGQGTQVTVSSALVPR
Camel-derived nanobody 1.29 D 126 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGSVQAGGSLRLSCAASGYTINTDAVAWFRQAPGKGDERVAVIYTGSGNTNYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTALYYCASGYYGASGYDFNNWGQGTQVTVSSALVPR
Camel-derived nanobody 1.29 F 126 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGSVQAGGSLRLSCAASGYTINTDAVAWFRQAPGKGDERVAVIYTGSGNTNYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTALYYCASGYYGASGYDFNNWGQGTQVTVSSALVPR
Camel-derived nanobody 1.29 H 126 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGSVQAGGSLRLSCAASGYTINTDAVAWFRQAPGKGDERVAVIYTGSGNTNYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTALYYCASGYYGASGYDFNNWGQGTQVTVSSALVPR
Camel-derived nanobody 1.29 J 126 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGSVQAGGSLRLSCAASGYTINTDAVAWFRQAPGKGDERVAVIYTGSGNTNYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTALYYCASGYYGASGYDFNNWGQGTQVTVSSALVPR
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-12-20
Deposition Author(s): Casasnovas, J.M. , Fernandez, L.A. , Silva, K.