Crystal structure of the f420-reducing carbon monoxide dehydrogenase component from the ethanotroph candidatus ethanoperedens thermophilum
PDB DOI: 10.2210/pdb8riu/pdb
Classification: OXIDOREDUCTASE Organism(s): Candidatus Methanoperedenaceae Archaeon Gb50
Deposited: 2023-12-19 Deposition Author(s): Lemaire, O.N. , Wagner, T.
Crystal structure of the f420-reducing carbon monoxide dehydrogenase component from the ethanotroph candidatus ethanoperedens thermophilum
Primary Citation of Related Structures: 8RIU
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Acetyl-CoA decarbonylase/synthase complex subunit alpha | A | 792 | Candidatus Methanoperedenaceae Archaeon Gb50 | MTKTEKKGNIEIEALKDVVVNIGGIEEEEEEWEPMGPTPMPGIVDLRDWDYKLMDRYKPFYAPYCEMCCFCTFGKCDLTGGKKGACGLDMTAQQARFVTIACLIGCSAHTAHGRHMLNEILHIYGDREIDMGTGINIEAPLTRLITGIKPKRLSDFIPVLDYIEEQIAQVMDSVHTGQEGSNIDYESKAFHVGMLDSLGKEVADIVQIVAFDLPKGDPDAPLVEIGMGCIDETKPMLLVIGHNVVPSVSVIDYMREHDLEDKIEVAGICCTAIDTTRYSDRAKIVGSIGRQLRFVRSGIADVIMVDEQCIRADILEQAKRTHAPLIATNDKALYGLVDRTDDSADDIITILVSGKEPGVVILDPVKAGEVAVRLVQIMHEKRKGLVHLPTDEEFKEYVEMCQNCDANCVIACPQGLPIGEANKAAAAGNIEPLAELFDLCVGCGRCEQVCKKHIPIVDVIHKAALPLVRAEKGMIRVGRGPVLDTEIRNVGAPLVLGTIPGIIAIVGCGNYPNGTKDVYIMAKEFVERKYIVVLTGCGAMDAALYRDEDGKTLYEKYPGDFDGGCIVNIGSCVSNAHIHDAAIKVASIFARRNIRANYAEIADYILNRVGACGMAWGAMSQKAASIASGVNRIGIPVVIGPHGWKYRRAYLGRKDVDRDWMVYDARDGSKVRIEPAPEHLLVAADTLEEAIPLMARLCFRPTDNSMGRQVKLTHYMDLSMKYLGKYPDDWPVFVRTEADLPLAKKEEYLRILKEDYGWDVDLEAKKIISGPIRKFDVSFDATNLEQLIRENK |
Acetyl-CoA decarbonylase/synthase complex subunit alpha | D | 792 | Candidatus Methanoperedenaceae Archaeon Gb50 | MTKTEKKGNIEIEALKDVVVNIGGIEEEEEEWEPMGPTPMPGIVDLRDWDYKLMDRYKPFYAPYCEMCCFCTFGKCDLTGGKKGACGLDMTAQQARFVTIACLIGCSAHTAHGRHMLNEILHIYGDREIDMGTGINIEAPLTRLITGIKPKRLSDFIPVLDYIEEQIAQVMDSVHTGQEGSNIDYESKAFHVGMLDSLGKEVADIVQIVAFDLPKGDPDAPLVEIGMGCIDETKPMLLVIGHNVVPSVSVIDYMREHDLEDKIEVAGICCTAIDTTRYSDRAKIVGSIGRQLRFVRSGIADVIMVDEQCIRADILEQAKRTHAPLIATNDKALYGLVDRTDDSADDIITILVSGKEPGVVILDPVKAGEVAVRLVQIMHEKRKGLVHLPTDEEFKEYVEMCQNCDANCVIACPQGLPIGEANKAAAAGNIEPLAELFDLCVGCGRCEQVCKKHIPIVDVIHKAALPLVRAEKGMIRVGRGPVLDTEIRNVGAPLVLGTIPGIIAIVGCGNYPNGTKDVYIMAKEFVERKYIVVLTGCGAMDAALYRDEDGKTLYEKYPGDFDGGCIVNIGSCVSNAHIHDAAIKVASIFARRNIRANYAEIADYILNRVGACGMAWGAMSQKAASIASGVNRIGIPVVIGPHGWKYRRAYLGRKDVDRDWMVYDARDGSKVRIEPAPEHLLVAADTLEEAIPLMARLCFRPTDNSMGRQVKLTHYMDLSMKYLGKYPDDWPVFVRTEADLPLAKKEEYLRILKEDYGWDVDLEAKKIISGPIRKFDVSFDATNLEQLIRENK |
Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus | B | 370 | Candidatus Methanoperedenaceae Archaeon Gb50 | MKFDEKGSIIDLETKVVYSNICCYCGACGAFCTEYISYENGTPVTKQKCFEIHGACFDFCPRTFLPVLEMERELFGEVRSDWELGYYTDIVTARATNPEILEKGQNGGVVTALLTHLIDEGKIDAACITGRSDDEPWKPEPLVATTRDEILKGAGSNYEQCPAIMGVGEALANGSENIAMVGLPCHIQAMRKIQLSKAFDVGASRVKYAIGLLCTETFDRDLLHAKLREMKIKAEDVKKFDIGEGKFKVFTEEGVRTEKIATMKSCMRDGCKVCYDFAAELADISVGSIGSEEGWNTVLIRSKAGKELIDEAEKAKVIEVKPLNEASIQSVKDLASRKKSENMDNIVEIAGATKILHLAVKPQELSLLLG |
Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus | E | 370 | Candidatus Methanoperedenaceae Archaeon Gb50 | MKFDEKGSIIDLETKVVYSNICCYCGACGAFCTEYISYENGTPVTKQKCFEIHGACFDFCPRTFLPVLEMERELFGEVRSDWELGYYTDIVTARATNPEILEKGQNGGVVTALLTHLIDEGKIDAACITGRSDDEPWKPEPLVATTRDEILKGAGSNYEQCPAIMGVGEALANGSENIAMVGLPCHIQAMRKIQLSKAFDVGASRVKYAIGLLCTETFDRDLLHAKLREMKIKAEDVKKFDIGEGKFKVFTEEGVRTEKIATMKSCMRDGCKVCYDFAAELADISVGSIGSEEGWNTVLIRSKAGKELIDEAEKAKVIEVKPLNEASIQSVKDLASRKKSENMDNIVEIAGATKILHLAVKPQELSLLLG |
Acetyl-CoA decarbonylase/synthase complex subunit epsilon | C | 174 | Candidatus Methanoperedenaceae Archaeon Gb50 | MNIPFDIGNISGPEMGRIATPEALGRAIKNAKRPLLVVGSEILEDGLIDRAIAIGKKGIPIAATAHSIKGFVDAGYTDNVYMVGLHELANNIKSPDWMGFDGKGGYDLVAVLGGIYYSTSQFLISIKNCATDPLVRAISIDRYYHIAARMTFDNISRKRTDEFKEMLDRVVQSI |
Acetyl-CoA decarbonylase/synthase complex subunit epsilon | F | 174 | Candidatus Methanoperedenaceae Archaeon Gb50 | MNIPFDIGNISGPEMGRIATPEALGRAIKNAKRPLLVVGSEILEDGLIDRAIAIGKKGIPIAATAHSIKGFVDAGYTDNVYMVGLHELANNIKSPDWMGFDGKGGYDLVAVLGGIYYSTSQFLISIKNCATDPLVRAISIDRYYHIAARMTFDNISRKRTDEFKEMLDRVVQSI |
Method: X-RAY DIFFRACTION
Deposited Date: 2023-12-19 Deposition Author(s): Lemaire, O.N. , Wagner, T.