8RGM
Cryo-em structure of nucleosome containing widom603 dna
PDB DOI: 10.2210/pdb8rgm/pdb
Classification: DNA BINDING PROTEIN Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2023-12-14 Deposition Author(s): Afonin, D. , Armeev, G.A. , Moiseenko, A. , Motorin, N.A. , Oleinikov, P. , Shaytan, A. , Shi, X. , Sokolova, O. , Studitsky, V. , Vasiliev, V. , Zhao, L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.0 Å
Cryo-em structure of nucleosome containing widom603 dna
Afonin, D. , Armeev, G.A. , Moiseenko, A. , Motorin, N.A. , Oleinikov, P. , Shaytan, A. , Shi, X. , Sokolova, O. , Studitsky, V. , Vasiliev, V. , Zhao, L.
Primary Citation of Related Structures: 8RGM
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3.1 | A | 135 | Homo Sapiens , Synthetic Construct | ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3.1 | E | 135 | Homo Sapiens , Synthetic Construct | ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | B | 102 | Homo Sapiens , Synthetic Construct | SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 102 | Homo Sapiens , Synthetic Construct | SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A type 1-B/E | C | 129 | Homo Sapiens , Synthetic Construct | SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2A type 1-B/E | G | 129 | Homo Sapiens , Synthetic Construct | SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2B type 1-J | D | 125 | Homo Sapiens , Synthetic Construct | PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B type 1-J | H | 125 | Homo Sapiens , Synthetic Construct | PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Widom 603 DNA sequence | i | 145 | NA | CCAGTTCGCGCGCCCACCTACCGTGTGAAGTCGTCACTCGGGCTTCTAAGTACGCTTAGGCCACGGTAGAGGGCAATCCAAGGCTAACCACCGTGCATCGATGTTGAAAGAGGCCCTCCGTCCTTATTACTTCAAGTCCCTGGGG |
| Widom 603 DNA sequence | j | 145 | NA | CCCCAGGGACTTGAAGTAATAAGGACGGAGGGCCTCTTTCAACATCGATGCACGGTGGTTAGCCTTGGATTGCCCTCTACCGTGGCCTAAGCGTACTTAGAAGCCCGAGTGACGACTTCACACGGTAGGTGGGCGCGCGAACTGG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-12-14 Deposition Author(s): Afonin, D. , Armeev, G.A. , Moiseenko, A. , Motorin, N.A. , Oleinikov, P. , Shaytan, A. , Shi, X. , Sokolova, O. , Studitsky, V. , Vasiliev, V. , Zhao, L.