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FASTA Sequence PDB Format mmCIF Format
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8RFJ

Dna bound type iv-a1 crispr effector complex with the ding helicase from p. oleovorans

PDB DOI: 10.2210/pdb8rfj/pdb

Classification: GENE REGULATION
Organism(s): Pseudomonas Oleovorans , Synthetic Construct

Deposited: 2023-12-12
Deposition Author(s): Cepaite, R. , Malinauskaite, L. , Miksys, A. , Pausch, P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.18 Å

Literature

Dna bound type iv-a1 crispr effector complex with the ding helicase from p. oleovorans

Cepaite, R. , Malinauskaite, L. , Miksys, A. , Pausch, P.

Primary Citation of Related Structures: 8RFJ


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR type AFERR-associated protein Csf2 A 347 Pseudomonas Oleovorans , Synthetic Construct MQIEVLIRNITPIFSAAPGSYYVSLDGTINPPQGASRFPLTRARTMTVVAETGDGVAKAVPLPIVPGNTMRNLLRRTMLKDVIEPALRDKSAQLSIGAYATAYAGNSSGNPDGVPSSFDEIVTMRAHPFLGLFGGGPRMLQGRLMVDSLYPIHQFSQRIIGSDYINDSIKGGITEIVWTRRNDPILQLGSPDDAAVIEGGAQAANDWITSLLATTKAKKGKAAKQADEAAESSDDNGRGLKAFNAHEVVIAGVKWLWRINVDRPSESQIGLILLALNKLANQRIAGGHAKDYGRFVIEDVILDGESVWTPSGVSGQATEQFFDAIAEALDGMTSSEFEQFAASAKEA
CRISPR type AFERR-associated protein Csf2 B 347 Pseudomonas Oleovorans , Synthetic Construct MQIEVLIRNITPIFSAAPGSYYVSLDGTINPPQGASRFPLTRARTMTVVAETGDGVAKAVPLPIVPGNTMRNLLRRTMLKDVIEPALRDKSAQLSIGAYATAYAGNSSGNPDGVPSSFDEIVTMRAHPFLGLFGGGPRMLQGRLMVDSLYPIHQFSQRIIGSDYINDSIKGGITEIVWTRRNDPILQLGSPDDAAVIEGGAQAANDWITSLLATTKAKKGKAAKQADEAAESSDDNGRGLKAFNAHEVVIAGVKWLWRINVDRPSESQIGLILLALNKLANQRIAGGHAKDYGRFVIEDVILDGESVWTPSGVSGQATEQFFDAIAEALDGMTSSEFEQFAASAKEA
CRISPR type AFERR-associated protein Csf2 C 347 Pseudomonas Oleovorans , Synthetic Construct MQIEVLIRNITPIFSAAPGSYYVSLDGTINPPQGASRFPLTRARTMTVVAETGDGVAKAVPLPIVPGNTMRNLLRRTMLKDVIEPALRDKSAQLSIGAYATAYAGNSSGNPDGVPSSFDEIVTMRAHPFLGLFGGGPRMLQGRLMVDSLYPIHQFSQRIIGSDYINDSIKGGITEIVWTRRNDPILQLGSPDDAAVIEGGAQAANDWITSLLATTKAKKGKAAKQADEAAESSDDNGRGLKAFNAHEVVIAGVKWLWRINVDRPSESQIGLILLALNKLANQRIAGGHAKDYGRFVIEDVILDGESVWTPSGVSGQATEQFFDAIAEALDGMTSSEFEQFAASAKEA
CRISPR type AFERR-associated protein Csf2 D 347 Pseudomonas Oleovorans , Synthetic Construct MQIEVLIRNITPIFSAAPGSYYVSLDGTINPPQGASRFPLTRARTMTVVAETGDGVAKAVPLPIVPGNTMRNLLRRTMLKDVIEPALRDKSAQLSIGAYATAYAGNSSGNPDGVPSSFDEIVTMRAHPFLGLFGGGPRMLQGRLMVDSLYPIHQFSQRIIGSDYINDSIKGGITEIVWTRRNDPILQLGSPDDAAVIEGGAQAANDWITSLLATTKAKKGKAAKQADEAAESSDDNGRGLKAFNAHEVVIAGVKWLWRINVDRPSESQIGLILLALNKLANQRIAGGHAKDYGRFVIEDVILDGESVWTPSGVSGQATEQFFDAIAEALDGMTSSEFEQFAASAKEA
CRISPR type AFERR-associated protein Csf2 E 347 Pseudomonas Oleovorans , Synthetic Construct MQIEVLIRNITPIFSAAPGSYYVSLDGTINPPQGASRFPLTRARTMTVVAETGDGVAKAVPLPIVPGNTMRNLLRRTMLKDVIEPALRDKSAQLSIGAYATAYAGNSSGNPDGVPSSFDEIVTMRAHPFLGLFGGGPRMLQGRLMVDSLYPIHQFSQRIIGSDYINDSIKGGITEIVWTRRNDPILQLGSPDDAAVIEGGAQAANDWITSLLATTKAKKGKAAKQADEAAESSDDNGRGLKAFNAHEVVIAGVKWLWRINVDRPSESQIGLILLALNKLANQRIAGGHAKDYGRFVIEDVILDGESVWTPSGVSGQATEQFFDAIAEALDGMTSSEFEQFAASAKEA
CRISPR type AFERR-associated protein Csf3 F 222 Pseudomonas Oleovorans , Synthetic Construct MDFLKVTINLGSPMVEPGDLFHLDALLGALRVSEVRAELGDGINPRDHHYDLPLEQYRSRSGQWVFKASAFHINKGAASQNWMQTSRINTAEAARHRSEGFLLLRAAKPNPAGGPFKNSLYHYPLVWATLTAYCVGDQARIADLLSQCRQIGGRRGVGCGRVAGFSVEVVPEVECTWALRAMPDDSEQSILCGEYALAMSALQSPYWDRSLHKPALVPTSLA
CRISPR type AFERR-associated protein Csf1 G 240 Pseudomonas Oleovorans , Synthetic Construct MRYPSDVVDQVFKLPPDKGLLTWDNDPVACSHCARPIEKGDLYSPSSVGAFFSDTRNLASTSRSICWRCLILRKKQMLNGLSYALITQDGVFQISKDTNKAWLFTTPPPAPFFVMHSSSTMQHLCWRTPVTLDNRLIKVRYGNNLFVVRPEAIREALEIADRMNEGQKKWQAPIFLDRKAADSGHGALTKAGREHLSAADQEFLLNITPGERWALAYIMHSKRPQPEEPECITSKILEKL
ATP-dependent DNA helicase DinG K 718 Pseudomonas Oleovorans , Synthetic Construct VEVIRIGAIAPPEKQRSQWARDKLAEAIELKLEPIAVPLHEVESFTSTMNPALASQLKRMAKDCNIPLARLTAGLLAALRRHYEAMEVAPAPVNPETGIPGQSEVREVLLPLLEQSASAIEKGKIVFAEAATGTGKGRMIASLAANAAAKGDTVVISAPLAVTWQLIDALKGIREAQVAGITLSLGRPNFVSPDRVLEWAVDNERVELAAWVEQGGKPLSERTKGASEVIEHELCWMLEDALVLAEDLPIDAIMLSPDDDDDCPAQRLYKSMRNNHSEAGIVLCSHYMLAAHVRFMQLRGLAGEDDPAEPAQSFSLPQAIDTLIVDEAHLLEQAFAAIYSHTLRLRPLVRAIESHVGRGKTPVVNALNALAQQITRTVQQGKDGGARVCQLDEVPSLEPALRDALTALESISVKSLDGGAKAVIRVAIRAIKDALSGRSRLRMELTPVRHFPMLVSGRANLQKALLSLWDSVAGAALVSATIYASDDHAVLTRWKLEVPPARAIYLPPVHPAWTTEPVVLHPDRNAIEPNDSPEWADETAGLITKVAERAAGGTLVLCTSYQNAELLQGRLLAVLGERLIVQTKVSSASMCVAQYKALYRAGARPVWLGVGAAWTGIDLSDEQATDPADDAMLSDLVITRLPVGLNRSLTHERRVAIAGFKIVTLEAVWQLRQGLGRLVRRPGVKNKNLWVLDSRIGGNTPWVAPYRKLLSRYRTAPL
CRISPR type AFERR-associated protein Csf5 M 236 Pseudomonas Oleovorans , Synthetic Construct MFVTQVIFNMGERAYPDRARAMVAELMDGVQPGLVATLMNYIPGTSTSRTEFPTVQFGGASDGFCLLGFGDGGGAIVRDAVPLIHAALARRMPDRIIQVEHKEHSLSAEARPYVLSYTVPRMVVQKKQRHAERLLHEAEGKAHLEGLFLRSLQRQAAAVGLPLPENLEVEFKGAVGNFAAKHNPNSKVAYRGLRGAVFDVNARLGGIWTAGFMLSKGYGQFNATHQLSGAVNALSE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
crRNA h 61 NA GUGAGCGGCAUCCAAGUUACGCAUCAGAUUCGAGACGCGAGUAUUUCCCGCGUGCGCGGGG
Target strand (TS-)DNA i 61 NA CGGTCGGGTCATACGTCGCGTCTCGAATCTGATGCGTAACTTGGATGCTTCGTGCGTGATG
Non-target strand (NTS-) DNA j 61 NA CATCACGCACGAAGACCAAGTCAATGCTTAGTCTAATACCTGCGCTCGTATGACCCGACCG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-12-12
Deposition Author(s): Cepaite, R. , Malinauskaite, L. , Miksys, A. , Pausch, P.