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FASTA Sequence PDB Format mmCIF Format
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8R9Y

S1b domain of the pdcov spike glycoprotein in complex with the 67b12 and 42h3 antibody fab fragments

PDB DOI: 10.2210/pdb8r9y/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Porcine Deltacoronavirus

Deposited: 2023-11-30
Deposition Author(s): Debski-Antoniak, O. , Hurdiss, D.L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

8r9y
Literature

S1b domain of the pdcov spike glycoprotein in complex with the 67b12 and 42h3 antibody fab fragments

Debski-Antoniak, O. , Hurdiss, D.L.

Primary Citation of Related Structures: 8R9Y


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein A 214 Homo Sapiens , Porcine Deltacoronavirus MPMGSLQPLATLYLLGMLVASVLATLPKLPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGTTSVHATDTDPDYKDDDDKAGPGWSHPQFEKGGGSGGGSGGGSWSHPQFEKGGGSGGGSGGGSWSHPQFEK
67B12 antibody heavy chain B 218 Homo Sapiens , Porcine Deltacoronavirus VQLVQSGAEVKKPGSSVKVSCKASGGTFSSLAISWVRQAPGQGLEWMGGIIPTFGTTNYAQNFRGRVTITADKSTSTAYMELSTLISEDTAVYFCARERSTDTWPGDAFDIWGQGTMVTVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLLGQTYICNVNHKPSNTKVDKKVEPK
67B12 antibody light chain C 209 Homo Sapiens , Porcine Deltacoronavirus EILMTQSPATLSVSPGERATLSCWASQSVNSKLAWYQQKPGQAPRLLIYDTSTRATGIPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNYWPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF
42H3 antibody heavy chain H 219 Homo Sapiens , Porcine Deltacoronavirus QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYDMHWVRQAPGKGLEWVAVIWRDGSNEYYADSVKGRFIISRDNSKNTLYLQMNSLRAEDTAVYYCARRGIIMVRGLLGYWGQGTLVTVSSASTKGPSVFPLAPSSKSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
42H3 antibody light chain L 212 Homo Sapiens , Porcine Deltacoronavirus DIQMTQSPPSLSASVGDRVTITCRASQGISNYLAWHQQKPGKVPKLLIYTASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCQKYNSAPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-11-30
Deposition Author(s): Debski-Antoniak, O. , Hurdiss, D.L.