S1b domain of the pdcov spike glycoprotein in complex with the 67b12 and 42h3 antibody fab fragments
PDB DOI: 10.2210/pdb8r9y/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Porcine Deltacoronavirus
Deposited: 2023-11-30 Deposition Author(s): Debski-Antoniak, O. , Hurdiss, D.L.
S1b domain of the pdcov spike glycoprotein in complex with the 67b12 and 42h3 antibody fab fragments
Debski-Antoniak, O. , Hurdiss, D.L.
Primary Citation of Related Structures: 8R9Y
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Spike protein | A | 214 | Homo Sapiens , Porcine Deltacoronavirus | MPMGSLQPLATLYLLGMLVASVLATLPKLPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGTTSVHATDTDPDYKDDDDKAGPGWSHPQFEKGGGSGGGSGGGSWSHPQFEKGGGSGGGSGGGSWSHPQFEK |
67B12 antibody heavy chain | B | 218 | Homo Sapiens , Porcine Deltacoronavirus | VQLVQSGAEVKKPGSSVKVSCKASGGTFSSLAISWVRQAPGQGLEWMGGIIPTFGTTNYAQNFRGRVTITADKSTSTAYMELSTLISEDTAVYFCARERSTDTWPGDAFDIWGQGTMVTVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLLGQTYICNVNHKPSNTKVDKKVEPK |
67B12 antibody light chain | C | 209 | Homo Sapiens , Porcine Deltacoronavirus | EILMTQSPATLSVSPGERATLSCWASQSVNSKLAWYQQKPGQAPRLLIYDTSTRATGIPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNYWPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF |
42H3 antibody heavy chain | H | 219 | Homo Sapiens , Porcine Deltacoronavirus | QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYDMHWVRQAPGKGLEWVAVIWRDGSNEYYADSVKGRFIISRDNSKNTLYLQMNSLRAEDTAVYYCARRGIIMVRGLLGYWGQGTLVTVSSASTKGPSVFPLAPSSKSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
42H3 antibody light chain | L | 212 | Homo Sapiens , Porcine Deltacoronavirus | DIQMTQSPPSLSASVGDRVTITCRASQGISNYLAWHQQKPGKVPKLLIYTASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCQKYNSAPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG |
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-11-30 Deposition Author(s): Debski-Antoniak, O. , Hurdiss, D.L.