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FASTA Sequence PDB Format mmCIF Format
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8R80

Sars-cov-2 delta rbd in complex with xbb-9 fab and an anti-fab nanobody

PDB DOI: 10.2210/pdb8r80/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct

Deposited: 2023-11-27
Deposition Author(s): Ren, J. , Stuart, D.I. , Zhou, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.03 Å

Literature

Sars-cov-2 delta rbd in complex with xbb-9 fab and an anti-fab nanobody

Ren, J. , Stuart, D.I. , Zhou, D.

Primary Citation of Related Structures: 8R80


Proteins
Molecule Chains Sequence Length Organism Sequence
XBB-9 Fab heavy chain H 224 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct QVQLVETGGGLVQPGGSLRLSCEASEIIVSANYMTWVRQAPGKGLEWVSLIYPGGTTYLSDSLKGRFTVSRDNSKNTMNLEMNSLRAGDTAVYYCARLIVGGIAGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
XBB-9 Fab heavy chain A 224 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct QVQLVETGGGLVQPGGSLRLSCEASEIIVSANYMTWVRQAPGKGLEWVSLIYPGGTTYLSDSLKGRFTVSRDNSKNTMNLEMNSLRAGDTAVYYCARLIVGGIAGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
XBB-9 Fab light chain L 214 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct AIQLTQSPSSLSASVGDRVTITCQATHDINKFLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGFGTTFTFTISSLQPEDIATYFCHQYENIPPIFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
XBB-9 Fab light chain B 214 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct AIQLTQSPSSLSASVGDRVTITCQATHDINKFLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGFGTTFTFTISSLQPEDIATYFCHQYENIPPIFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Spike protein S1 E 202 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct HHHHHHTNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGKK
Spike protein S1 R 202 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct HHHHHHTNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGKK
anti-Fab nanobody N 135 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct MAGSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSSHHHHHHEPEA
anti-Fab nanobody J 135 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct MAGSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSSHHHHHHEPEA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-11-27
Deposition Author(s): Ren, J. , Stuart, D.I. , Zhou, D.