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FASTA Sequence PDB Format mmCIF Format
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8R1O

Structure of c. thermophilum rna exosome core

PDB DOI: 10.2210/pdb8r1o/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Ustilago Maydis (Strain 521 / Fgsc 9021)

Deposited: 2023-11-02
Deposition Author(s): Lazzaretti, D. , Liebau, J. , Pilsl, M. , Sprangers, R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.19 Å

Literature

Structure of c. thermophilum rna exosome core

Lazzaretti, D. , Liebau, J. , Pilsl, M. , Sprangers, R.

Primary Citation of Related Structures: 8R1O


Proteins
Molecule Chains Sequence Length Organism Sequence
Rrp45 A 293 Ustilago Maydis (Strain 521 / Fgsc 9021) MPREVEPSLSERQFVLQALQEGLRLDGRQLDQYRPLSLTFGDQYGVADVTFGKTRVLAKASAEVTVPYADRPLDGIFTIATELSPMTSPTFEVNRPTETEVLLSRLLEKTIRRSGALDTESLCLVAGQKCWSIRVDVHVMSHDGNLVDAACIAVVAALRHFRKPDTSIESGVLTIYTPAEREPVPLSWLHTPFCVTWSFFGDEGEIAVLDATWLEEQVRVGSCTISMNKHGEICQIAKLGGTPVEAVSLLQCTSIALTKVKEFSDLVDKKLAEDFKRRNPGGLLKELKAENDR
Exoribonuclease phosphorolytic domain-containing protein B 284 Ustilago Maydis (Strain 521 / Fgsc 9021) MPLDTSTYKLALLRVDGRRWNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGTGAGTTGGGGAGGAGGGGSGGQGKEAEVVVSIVIAGFSSVDRKRHGRNDKRIIEMQSTVANALSASLHTHLFPHSQITISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVVACTAGSTSTYAANDENADPLLDLNHQEEQELPWLTVATLGESDKVAVLVCESRVQVSRLEGMLAVGVDGCKQIRAILDHVVRQKGRRMIREGAVEKGVSLDDMDED
Exoribonuclease-like protein C 357 Ustilago Maydis (Strain 521 / Fgsc 9021) MATDAASAPHSLTFPRGIFAKLSPHPYLLRTLCPDPSNSSSTPQRTNGRRPNEARPFRVNLGSLSHAHGSALVRAGDTTVLCGVRGEVLPVERIPLFRQPDVNGSGIGATVGRGELKEYDLLVPNIELATGSAPQFLPGVPPTALAQTLSTRVYSLLHSTRLVSAEELRIWYRPVATNRSKEGEDVEMEEECQEESGEEQDRVVAYWVLYIDLVFLSFDGNPFDVAWAAVVAALRDTKLPVARWDPDREMVVCSKTETMKLTIKGLPIACSAAVFLEKEHGEVAVGEKNRHWILLDPDRLEESLCKEVITMVVDFSDGETRIRAIEKQGGTVFGRELIRSFALVAEDRWKVVKEVMK
Exoribonuclease phosphorolytic domain-containing protein D 258 Ustilago Maydis (Strain 521 / Fgsc 9021) MTTTTATTAPEAALGVLPRADGSARYSHAGYTVTASVNGPIEAQRRDEHPYEAHVDVIVRPAAGVGGTRERHLESILQSSFAQIILVKSFPRSLIQIVLQVEESPENEYVNTKLVQASLNFAVMPALFQTAMLALLSAGVPMRATATATAIALASENGATKTLIDPSPRQVELAQSVHVFAFTSQDELLLAESEGDFTIKEWDAAYETAKNICCRPSPTMDGVQMMAIDDDRLVGPDLRHFIRSTMEAKVATDLHWKS
Exoribonuclease phosphorolytic domain-containing protein E 413 Ustilago Maydis (Strain 521 / Fgsc 9021) MSAASSQHVLLSPAELAYLHASLSLTPPIRPDGRSPTQFRPLIAETGILPGANGSARVCFADGTEAIVGVKAEVEKTVSRSKEDEEVGLLVASAGDMDVDDEEGYAKVGADNRTGEASWVEITVEIPGVRDDDSGMVFLAQLLGEALLADGEFVKKLWINRRYHWKLYIDILLISPPLSYPLPLLSLTTHLALLSTRLPRLKSEGDEDPYFDDDWAVAPYLFPRSSSASKSSKSSPTQPTTRPPITLLVMAVGNNILFDPSKEELAVADVALAVSVTATDVDPDESDAQKETATATAGPDSADAAKRGRKLRLLSIRTIDPPSRLTPPGVPNSTNPAAIYGTTSSSGTNGNGQPQQKVESGKISEPIEPIEGVWRAPRGGAKRLVLGALVQKVLEKGGVVDEVLDALEGVELT
Exosome complex component MTR3 F 284 Ustilago Maydis (Strain 521 / Fgsc 9021) MTDRRRINGPAGATIPPVYEDSGISEVKALKIRSRPSNIIRKIYLKTGVTPSASGSAYLELETSANSGVSGLKLSCTVHGPRSLPRSSPFSPHMVVSTHVKYAPFATKQRRGYLRDPTERDLGIHLEAALRGAIIADRWPKSGVDIIISIIEGDQDREASKTQGDEVWDMMNTLSGCITVASAALADAGIDCVDTVAGGVAALVQDSDGSPEIVVDPIPSEHRKILAACCVAYLPMRDEVTNLWFRGDLPASDMDLYTELVEKGIQASRSANRVLVDCLTETVG
Ribosomal RNA-processing protein 40 G 256 Ustilago Maydis (Strain 521 / Fgsc 9021) MSTTTRPFVLPGETIDPSLVPTHPKHPLRLGPGLRHVPPSDIIPTVAGQLITNLNKNSMWVEYNSQRYVPTQNDLVLAQVLRSTQDSYLCLITPHTPPATLPHLAFESATKKTRPQLQPGQLVYARVSLANRHMDPELECVNPSTGKADGLGPITGPGCVFEVSLGFARRLLMAKSREEGKVGVLEMLAGEDPSIGEAGAGLAFETAVGRNGRVWVGSEDVKTVIIVGRALQETDRGNLTIEGQRKLVRRLLREMR
Putative exosome complex protein H 358 Ustilago Maydis (Strain 521 / Fgsc 9021) MPITIHAPLPPPRLHDEDSDVDMSSDSDSSSEGGVPLTSNLPSRAKPKSSLFTTTKSSSDIVTPGELITTSPQFMRGHGTYIPPGTTSIISSVAGTILRTNKLLSVRPLRARYTPEVGDLVVGRIIEVQARRWRVDVGSTQFASLPLSAINLPGGILRKRTETDELQMRSFFSEGDLLVAEVQGVYGDGGAVLHTRSLKYGKLRNGVFVAVSGMGGGGGVVRSRRQVWTLEGANGAGLIDVVLGVNGYVWIAKHTEDGPGEDPNASTKQVGITNLEEGMSANMYSSQNDRIEAETMREIARLRGVVMALVENGLRVDEDMVMRGYREAVEMALVSPEGPEDVYLGGERGRQLAAALTA
Putative exosome 3'->5 protein I 220 Ustilago Maydis (Strain 521 / Fgsc 9021) MTTTQPTLALPGQLLGPISKYQPGPGTHVHESNLYSSLLGTVHVTQPARAPGPVKRLNRITPAPTPAELPTISVSAARPAGSAASGLVTGRKREILPEVGNIVLCRVIRITPRQAVVTILVCGDTVLDAEWQGLIRVQDIRATEKDRVKVYESFRPGDIVRAEVISLGDQANYYLSTARNELGVILATSEAGNTMYPVSWREYRDPITGLTELRKVAKPY
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-11-02
Deposition Author(s): Lazzaretti, D. , Liebau, J. , Pilsl, M. , Sprangers, R.