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8QMB

Nucleant-assisted 2.0 a resolution structure of the streptococcus pneumoniae topoisomerase iv-v18mer dna complex with the novel fluoroquinolone delafloxacin

PDB DOI: 10.2210/pdb8qmb/pdb

Classification: ISOMERASE
Organism(s): Streptococcus Pneumoniae , Synthetic Construct

Deposited: 2023-09-21
Deposition Author(s): Chayen, N.E. , Fisher, L.M. , Najmudin, S. , Pan, X.S. , Sanderson, M.R. , Wang, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

8qmb
Literature

Nucleant-assisted 2.0 a resolution structure of the streptococcus pneumoniae topoisomerase iv-v18mer dna complex with the novel fluoroquinolone delafloxacin

Chayen, N.E. , Fisher, L.M. , Najmudin, S. , Pan, X.S. , Sanderson, M.R. , Wang, B.

Primary Citation of Related Structures: 8QMB


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA topoisomerase 4 subunit B,DNA topoisomerase 4 subunit A A 742 Streptococcus Pneumoniae , Synthetic Construct MKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVFHMSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKALEHHHHHH
DNA topoisomerase 4 subunit B,DNA topoisomerase 4 subunit A B 742 Streptococcus Pneumoniae , Synthetic Construct MKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVFHMSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKALEHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(TP*GP*TP*GP*GP*AP*T)-3') e 7 NA TGTGGAT
DNA (5'-D(P*GP*GP*TP*TP*AP*TP*CP*CP*AP*CP*A)-3') f 11 NA GGTTATCCACA
DNA (5'-D(GP*TP*AP*AP*TP*AP*C)-3') g 7 NA GTAATAC
DNA (5'-D(P*AP*AP*CP*CP*GP*TP*AP*TP*TP*AP*C)-3') h 11 NA AACCGTATTAC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-09-21
Deposition Author(s): Chayen, N.E. , Fisher, L.M. , Najmudin, S. , Pan, X.S. , Sanderson, M.R. , Wang, B.