8QMA
Structure of the plastid-encoded rna polymerase complex (pep) from sinapis alba
PDB DOI: 10.2210/pdb8qma/pdb
Classification: TRANSCRIPTION Organism(s): Sinapis Alba
Deposited: 2023-09-21 Deposition Author(s): Ahrens, F.M. , Do Prado, P.F.V. , Hillen, H.S. , Pfannschmidt, T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.5 Å
Structure of the plastid-encoded rna polymerase complex (pep) from sinapis alba
Ahrens, F.M. , Do Prado, P.F.V. , Hillen, H.S. , Pfannschmidt, T.
Primary Citation of Related Structures: 8QMA
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| PAP4 | G | 264 | Sinapis Alba | MASCVVTTSSFCTLSDSNIRLKSSKLVHLSNQQRRRFPLGSRGGLKVEAYYGLKTPPYPLDALEPYMSRRTLEVHWGKHHRGYVDNLNKQLGKDDKLYGYTMEELIKATYNNGNPLPEFNNAAQVYNHDFFWESMQPGGGDMPQKGVLEQIEKDFGSFTNFREKFTNAALTQFGSGWVWLVLKREERRLEVVKTSNAINPLVWDDIPIISLDVWEHSYYLDYKNERGKYINTFLNHLVSWNAAMSRMARAEAFVNLGEPNIPIA |
| DNA-directed RNA polymerase subunit beta | A | 1072 | Sinapis Alba | MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDIDHEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTNRNMQEQRIFIGNIPLMNSLGTSIVNGIYRVVINQILQSPGIYYQSELDHNGISVYTGTIISDWGGRLELEIDKKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQFSCVGGDPIFSESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALARLENVVKGTIGGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGRICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYELVEKSKKAQIRMLFLSPSQDEYYMIAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHEGKILYTDTEKIILSGNENTLSIPLIMYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEV |
| DNA-directed RNA polymerase subunit beta'' | B | 1373 | Sinapis Alba | MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKSRMMSERIFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRFITFGTQSISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHPTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQVIAEIREGTYTFHFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLILFSIHKDQDQMNIPFLSVERKSISSLSVNNDQVSQKFFSSDFSDKKKSGIPNYSELNGIVGTSHYNFIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEQEKEFIPHSGISVEIPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKFKTKYEMKVDRFFFIPEEVHILPESSAIMVENYSIIGVDTRITLNIRSQVGGLIRVERKKKRIELKIFSGDIHFPDKTDKISRHSGILIPPGRGKTNSKESKNLKNWIYVQRITPTKKKFFVLVRPVATYEIADSINLATLFPKDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNWDQDNKNSSLEEVRAFFVEVNTKGLIRDFIRIGLVKSHISYIRKRNNPPDSGLISADSMNPFYSISPKAGILHQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRIGPFNHVKYHNVINQSIKKKPLITIKNSSGPLGTAIQISNFYSFLPLLTYNQISVIKYLQLDNFKYIFQVIHSYLIDENGRIFNLDPYSNLVLNPFKLNWYFLHQNYNNNYCEETSTIISLGQFFCENVCIAKKEPYLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNRCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPAGTGFNKGLVHCSRQHTNILLEKKTKNLSLLEGDMRDILFYHREFCDSSI |
| DNA-directed RNA polymerase subunit alpha | C | 327 | Sinapis Alba | MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARDIILPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFHNKLVNLRQKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKMEHFHIEDVKKLLDILEKK |
| DNA-directed RNA polymerase subunit alpha | D | 327 | Sinapis Alba | MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARDIILPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFHNKLVNLRQKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKMEHFHIEDVKKLLDILEKK |
| PAP1 | E | 911 | Sinapis Alba | MSLFFLNPALPSNSIHPIPRRAAGISSIRCSISAPEKKPRRRRKQQQKRENEDSSSFGSSEAVSALERSLRLTFMDELMERARNRDPSGVSEVIYDMIAAGLSPGPRSFHGLVVAHALNGDEQGAMHSLRKELGAGQRPLPETMIALVRLSGSKGNAQRGLELLAAMEKLNYDIRQAWLILVEELVRTNHLEEANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHSNALDISYEMEAAGRFATTFHFNCLLSVQATCGIPEVAYATFENMEYGEDFMKPDTETYNWVIQAYTRADSYDRVQDVAELLGMMVEDYKRVQPNVKTHALLVECFTKYCVVKEAIRHFRALKNFEGGTKVLHNAGNFEDPLSLYLRALCREGRIVELIDALDAMRRDNQPIPPRAMIMSRKYRTLVSSWIEPLQEEAELGYEIDYLARYVEEGGLTGERKRWVPRRGKTPLDPDAAGFIYSNPIETSFKQRCLEDWKVHHRKLLRTLQSEGLPVLGDASESDYMRVMERLRNIIKGPAQNLLKPKAASKMVVSELKEELEAQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDELICRIKLHEGDTEFWKRRFLGEGLIETTAETKETDESSVATGEIENKTEVVAKEADDDEDDEEEEQEGDEDDDENEEEEEAVVVEPENRAEGEDLIKNKAADAKRHLQMIGVQLLKESDEANRTKKRGKRASRMTLEDDADEDWFPEEPFEAFKEMRERKVFDVSDMYTIADVWGWTWEKDFKNKTPRRWSQEWEVELAIVLMAKVIELGGVPTIGDCAVILRAAIRAPMPSSFLKILQTTHSLGYAFGSPLYDEIITLCLDLGELDAAIAIVADMETTGITVPDQTLDKVISARQSNEIPKSEHEEPPSSSESS |
| PAP3 | F | 675 | Sinapis Alba | MQICQATLTTFTFTNPSNPNFCKPKPLFPSFQPPRRVTLPPCRGFSSDEFPVDETFLEKFGPKDKDTEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLQSPEAIEAFKMLRPSYRKKKIKEMGITEDEWYAKQFEIRGDKPPPLDTSWAGPLVVRQIPPRDWPPKGWEVDRKELEFIREAHKLMAERVWLEDLDKDLKVGEDATVDKMCLERFKVFLKQYNEWVEANKDRLEEDSYKYDQDFYPGRRIRGKDYKEGMYELPFYYPGMICEGTVTTLHLYQGAFVDIGGVHEGWVPIKGNDWFWIRHFIRVGMHVIVEITAKRDPYRFRFPLELRFVHPNIDHMIFNKFDFPPIFHRDGDTNPDEIRRDCGRPPEPRKDPGSKPEEEGLLSDHPYVDKLWQLHVAEQMILDDYEANPEKYKGKKLSELSDDEGFDERKEIEHGEAYYKKTKLPKVILKTSVKELDLEAALIERKYHNKLMMEAKARGEGYKIEKLRRNIEMDEYDSLHWRRSLEEREALLRDISSRQALGLPLEEPGRYKPGSFFGKDQYDPTSALYQYDYWGEPKNSEISKQERMKDAHNKSIVGKGNVWYDMSYDDAIKQTIERRKAESNVVTQKEEETESKEEEEDDDDEYEFDDFDYSILSDESSIGYSEQQPLVNGTQVFTD |
| FLN2 | I | 611 | Sinapis Alba | MASLSFTQFLPFPRCSVDVPCLQPHGFVKFRGERWKGKHSFLMVAGRRKLSESAPLDEDDGGNGAVGGKKPTKVPKKSGARTAKKKVVAKDEPLEESSQLLVDSDNVSDNESDTKEPVRRTRKKAAASSDVNEGKTEKKVRRKRTVKKDKEVEDGLVTYDEASDVEEALTVEATDADSEGEEIDLSKHESEDISHTYGWPPLVCCFGSAQHAFVPSGRPANRLLDYERQERMKDAVWAPEKYIRAPGGCAGGVAIALASLGGKAAFMGKLGDDDFGQAMLYYLNVCQVQTRSVKIDSKRVTACSTMKISKRGRLKSTCVKPCAEDSLSKSEINVDVLKEAKMFYFTTHSLLDKKMMSTTLQAIKISKQLGNVIFYDLNLPLPLWQSLEETKSLIQEVWDLADVIEVTKQELEFLCGIEPTEEFDTKNNDSSKFVHYEPETVEPLWHENLKILFVTNGTSKIHYYTKEHNGAVLGMEDVPITPFTRDMSASGDGIVAGLIRMLTVQPDLMNDKGYLERTARYAIECGVVDQWLLAQTRGYPPKDDMEEEEDDDEEEEMESDPNGIRSITEREYRTSKPYDEPDGPYVMKPVEEREYRKLELVGSMGEDDDSS |
| PAP7 | J | 483 | Sinapis Alba | MASPVSLHYLINTFISKPQGFCNGTVSSPRPRSSFVRERQNSVKPIKVASLETQPFPLFQSPASEESSSSELESADPDFYKIGYVRRVRAYGVEFKEGPDGFGIYASKDIEPRRRARVIMEIPHELMITIRQKHPWMFFPDIVPIGHPIFDIINSTDPERDWDLRLACLLLFSFDREDHFWRLYGDFLPAADECSSLLLATEEDLAELQDPQLVSTIRQQQKRVLEFWEKNWHSGVPLKIKRLAEDAERFIWAVSIAQTRCISMKTRIGALVQDLNMMIPYADMLNHSFEPNCFLHWRPKDRILEVMSNAGQAIKKGEEMTINYMPGQKNNMLMERYGFSTPVNPWDAIPFSGDSRIHLNSFLSVFNIFGLPEEYYHDSELSGDDSFVDGAVIAAARTLPTWSDIDLPPIPSAERKAVKELQDECRKMLAEYPTTSEQDQKLLDSLSEARTTFATAVKYRMHRKMFIGKIIKALDIYQERLLF |
| DNA-directed RNA polymerase subunit beta' | T | 680 | Sinapis Alba | MIDRYKHQQLRIGLVSPQQISAWATKKIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFEIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNEWEDRKIVRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYETNYKYMKEPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASKEVPIEVHYESFGNYHEIYAHYLIVRSVKKETLYIYIRTTVGHISFYREIEEAIQGFSQACSYDT |
| PAP5 | H | 529 | Sinapis Alba | MASISTTSWLYRDKLCTESGKLGTCILQRPVKCGFPVKRLYVGITSKDVLMRDCIKCKKDDDDDDASEGSSKKDGQGYEYVSVERAPYYSYMDSTSGKMEPASGARASIPGEDYWPEGTSSRVRAARAPQPAGESSSFPSYGKNPGSRRKKNRKATEGNAAVETYDEVSDSEDSSEEEESDSSNGFVVYNNEVEGEDEEETGFELDKKLGRPHPFIDPTKKKQIETTLTSDESWWNWRKPEKEQWSRWQRRRPDVETVFLKAMAETGQVKLYGKEPTLTETSLYRARRHLFKEERLQAERERLAKEGPMAFYSEWVKAWKRDTSREAVQKHFEETGEDENTQLIEMFSHQTDREYRIMMGTDVRIKRDPLAMRMKEDQIKQIWGGDPVYPTINYIQAPDAVMDFRGPDFHEPTPNMLSYLKENCKVISREMHETLLAKEKTEQVEVPDIDDAMAQAVDIGENDDEEEDTEEAEKDEKVARNWSVLKSTPELRNSKPKPKKEGRMSLDEAVDDSENLTDFLMDFDEETDP |
| PAP8 | K | 334 | Sinapis Alba | MASSAASPSLSLLSLTPKPPPSPSTASATSHRLFPSFRTNGCFAPLTLKPRRGRSIIVKVDDGDADGGGQDEYDMDDEEVEEVDNKKDYDVEYDPLAAAMAAASGGGGDGDIAFVQSKSFISTQGWDSEMVVDYRINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSVPRVLAPMPQKYIRCAMSDYGCYDVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRLNDPEFVLDFEEIYVIDSKTKSITRARVLVTVPGGRKRDRKDDLLVIRDNGNSFKIIHVGERDDPTTVIEREEWTKTREDMEKHLRKLRDFSVSNWF |
| PAP9 | L | 297 | Sinapis Alba | MMTSTCSFLSSCSLLPSQEPNQRMQWKRHEKRQFSRKVAVSGVIRAGFELKPPPYPLDALEPHMSRETLDYHWGKHHKTYVENLNKQIVGTDLDGLSLEEVVLLSYNRGNMLPAFNNAAQAWNHEFFWESIQPGGGGKPSGDLLRLIERDFGSFSDFVERFKAAAASNFGSGWTWLAYKANRLDVANAVNPLPKEEDKKLVIVKTPNAVNPLVWDYSPLLTIDTWEHAYYLDFENRRIEYINTFMEKLVSWETVSTRLESAMARAAQREQEGSDTEAEENPDDEEPEVYLDDASEVD |
| PAP10 | M | 184 | Sinapis Alba | MALVQSIALLPHLNVPLSPILSTLHAPSSLFLRKENRPVTSPFLSSTSGNSHFSPLTHPRKLLCTPPRGKFVREDYLVRKLTAEELQELVKGERKVPLIVDFYATWCGPCILMAQELEMLAVEYESNAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPSKDAIRTEGLIPLQMMRDIIDNDM |
| PAP10 | N | 184 | Sinapis Alba | MALVQSIALLPHLNVPLSPILSTLHAPSSLFLRKENRPVTSPFLSSTSGNSHFSPLTHPRKLLCTPPRGKFVREDYLVRKLTAEELQELVKGERKVPLIVDFYATWCGPCILMAQELEMLAVEYESNAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPSKDAIRTEGLIPLQMMRDIIDNDM |
| PAP11 | O | 768 | Sinapis Alba | MAFTFFSPHPVFLPLGRTTSSFSYKPVYSPFPRNSRNLQLAAGPARRNSYPNPADDDPPEAPEDSMHGVSKFQQIQRQAARARKLEEEDFEKNRNTYLSAIADVEDAPETGRDDVESGGDLFSDIDRAISMKRSEFVKKGLLQPNPPKTTSSKKLDEEEDDVTDVVDELDEEEVVDLDEIDKLTGLTEVSDEEDWVDEEGNPRINKKKETGSDHHFEFDLDDFGGSKARIVEPKFRLSLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSSGDLFVCCENEGDSVLSEADKRGAVAVVASKEIDIEDTLGCRALVIVEDTEAVLAALASSFYRHPSKNMAVIGVTGTNGKTTTTYLIKSLYEAMGVRTGMFSTVSCYVHGDNKMDSPTTTSPDAVLVQSMMAKMLHNGTEALVMEASPQELASGKCDEVDFDIAVFTNLTREDSDFRGTDEEYRDAEAKLFARMVDPERHRKVVNIDDPNAAFFVQQGNPDVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGILEISSGLLGRHNICNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFGVIVDHANTPDGLSRLLDSVRELKPRRIITVIGCAGENERGKRPVMTKIATEKSDVTMLTSDNPGNEDPLDILDDMLSGIGWTMQEYLKHGEHDYYPPLSNGHRLFLHDVRRVAVRCAVAMGEEGDMVVVAGKGHESYQLEGDKKEFYDDREECREALQYVDELHQAGIDTSEFPWRLPESH |
| PAP12 (DNA-directed RNA polymerase subunit omega) | P | 162 | Sinapis Alba | MFCSSFTSSISRIGDARSGNSRASSFTFQTQVSCGIQRDDNGRRIWRRRTLTKKDDMLRYKLQRVPFVEEQVRKIKEVGKVMTMDIERLLLSEDNRFEFVNSVAAEATEYVEKNRDEYGGTKKAIFHVLSNRVNDLGFDRPEAYAESDPYKPGPGYLKEYYT |
| PTAC18 | R | 140 | Sinapis Alba | MASLIMTTPFSGSLTQCKKKTNNLSVNRAFFKVTCSMQTPLEELYNVKVERKVSQRRLDELGVSRWSVWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSKRFMQFLAGDLVRYPKWLEADLFFNAPYSERYCFKAYADD |
| PAP6 | S | 460 | Sinapis Alba | MASLHLFPHLHHFDSIIHRREIAAHSRRQFLSPKASINGGVVTNGASAAETAKPSRKGRNKKKQTEETNPDSDPALVDYDDGIDFPYDDPPLVCCFGAVQKEFVPVVRVHDNPMHPDIYSQWKMLQWDPPEFGRAPGGPPSNVAISHVRLGGRAAFMGKVGGDDYGEELVLMMNKERVQTRGVKFDEGASTACTRVKIKFEDGKMKAETVKEPPEDSLLASELNLAVLKEARIFHFNSEVLTSPTMESTLFKAIQWSKKFGGLIFFDLNLPLPLWRSRNETRKLIKKSWDEANIIEVSQQELEFLLDEEYYERRRNYTPQYFAEDFEQTKNRRDYYHYTPEEIKPLWHDDLKLLVVTDGTLRLHYYTPKFDGVVVGTEDVLITPFTCDRTGSGDAVVAGIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQVYVPSMW |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-09-21 Deposition Author(s): Ahrens, F.M. , Do Prado, P.F.V. , Hillen, H.S. , Pfannschmidt, T.