PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8QLP

Cryoem structure of the rna/dna bound sparta (babago/tir-apaz) tetrameric complex

PDB DOI: 10.2210/pdb8qlp/pdb

Classification: IMMUNE SYSTEM
Organism(s): Bacillales Bacterium

Deposited: 2023-09-20
Deposition Author(s): Finocchio, G. , Heijstek, C. , Jinek, M. , Koopal, B. , Potocnik, A. , Swarts, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.14 Å

8qlp
Literature

Cryoem structure of the rna/dna bound sparta (babago/tir-apaz) tetrameric complex

Finocchio, G. , Heijstek, C. , Jinek, M. , Koopal, B. , Potocnik, A. , Swarts, D.

Primary Citation of Related Structures: 8QLP


Proteins
Molecule Chains Sequence Length Organism Sequence
Toll/interleukin-1 receptor domain-containing protein A 452 Bacillales Bacterium SNARNKIFISHAAPDDNDFTKWLALKLIALGYEVWCDVLFLDKGADFWKVIDKEIREGAIKFLLATSEIAIKRDGVLKEIAVAEKVKKQLKDDNFIIPLIIDENLSYDDLPPEIIRLNAVDFKKSWAVGLQDLLKALDDQKVEKNSPDPDKSNALYQQIFLHNKGIIEREEIYDSNWFSILSFPKELRFHDYEKLMPKGFDVRELTYPAVRYKNYLCTFAWEYDFMHQLPKTETYNSSQTIRIPTEEILSGKYDSPFIGNFECQRLIVQLLNKAFELRMKEKGVREYPMSNKMGYWFEKGKLEKDKFNKVLLVGKQKDKHWHFGISAAGKLYPFPVLMISSHIFFTKDGKELIESKKIQHAARRRQGKNWWNDDWRNKLLAFVKYLSDDENSFYLEVGSEEKIYISNEPVQFVGKVSYNMPEKNNLKDEAEISDLNDLNEFDGEIFEETDSE
Toll/interleukin-1 receptor domain-containing protein E 452 Bacillales Bacterium SNARNKIFISHAAPDDNDFTKWLALKLIALGYEVWCDVLFLDKGADFWKVIDKEIREGAIKFLLATSEIAIKRDGVLKEIAVAEKVKKQLKDDNFIIPLIIDENLSYDDLPPEIIRLNAVDFKKSWAVGLQDLLKALDDQKVEKNSPDPDKSNALYQQIFLHNKGIIEREEIYDSNWFSILSFPKELRFHDYEKLMPKGFDVRELTYPAVRYKNYLCTFAWEYDFMHQLPKTETYNSSQTIRIPTEEILSGKYDSPFIGNFECQRLIVQLLNKAFELRMKEKGVREYPMSNKMGYWFEKGKLEKDKFNKVLLVGKQKDKHWHFGISAAGKLYPFPVLMISSHIFFTKDGKELIESKKIQHAARRRQGKNWWNDDWRNKLLAFVKYLSDDENSFYLEVGSEEKIYISNEPVQFVGKVSYNMPEKNNLKDEAEISDLNDLNEFDGEIFEETDSE
Toll/interleukin-1 receptor domain-containing protein I 452 Bacillales Bacterium SNARNKIFISHAAPDDNDFTKWLALKLIALGYEVWCDVLFLDKGADFWKVIDKEIREGAIKFLLATSEIAIKRDGVLKEIAVAEKVKKQLKDDNFIIPLIIDENLSYDDLPPEIIRLNAVDFKKSWAVGLQDLLKALDDQKVEKNSPDPDKSNALYQQIFLHNKGIIEREEIYDSNWFSILSFPKELRFHDYEKLMPKGFDVRELTYPAVRYKNYLCTFAWEYDFMHQLPKTETYNSSQTIRIPTEEILSGKYDSPFIGNFECQRLIVQLLNKAFELRMKEKGVREYPMSNKMGYWFEKGKLEKDKFNKVLLVGKQKDKHWHFGISAAGKLYPFPVLMISSHIFFTKDGKELIESKKIQHAARRRQGKNWWNDDWRNKLLAFVKYLSDDENSFYLEVGSEEKIYISNEPVQFVGKVSYNMPEKNNLKDEAEISDLNDLNEFDGEIFEETDSE
Toll/interleukin-1 receptor domain-containing protein M 452 Bacillales Bacterium SNARNKIFISHAAPDDNDFTKWLALKLIALGYEVWCDVLFLDKGADFWKVIDKEIREGAIKFLLATSEIAIKRDGVLKEIAVAEKVKKQLKDDNFIIPLIIDENLSYDDLPPEIIRLNAVDFKKSWAVGLQDLLKALDDQKVEKNSPDPDKSNALYQQIFLHNKGIIEREEIYDSNWFSILSFPKELRFHDYEKLMPKGFDVRELTYPAVRYKNYLCTFAWEYDFMHQLPKTETYNSSQTIRIPTEEILSGKYDSPFIGNFECQRLIVQLLNKAFELRMKEKGVREYPMSNKMGYWFEKGKLEKDKFNKVLLVGKQKDKHWHFGISAAGKLYPFPVLMISSHIFFTKDGKELIESKKIQHAARRRQGKNWWNDDWRNKLLAFVKYLSDDENSFYLEVGSEEKIYISNEPVQFVGKVSYNMPEKNNLKDEAEISDLNDLNEFDGEIFEETDSE
Short prokaryotic Argonaute B 507 Bacillales Bacterium MKELIYIHEPNILFANGQKCADPRDGLALFGPFTKIYGIKSGVVGTQYGLSIFKNYINHIQKPIYNANNITRPMFPGFEAVFGCKWDADNVVFKEVTKEEIEKILYTESNHKRTYDLVSLFINKIITANKNEDEKVDVWFLVIPDEIYQYCRPNSVLPKDLVQTKSLITKSKAKSFRYEPTLFENINKELKEQEKEAITYNYDAQFHDQLKARLLEHTIPTQILRESTLAWRDFKNKFGAPKRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDIRSGVCYLGLVYKQIEKSSNPKNACCAAQMFLDNGDGTVFKGEVGPWYNQEKHEFHLNPKEAKALLTQALNSYKEQNGVFPKEIFIHAKTKFNGQEWNAFQEVTPEGTNLVGVTITKTKPLKLFKSEGNYPIMRGNAFIVNERSAFLWTVGYVPKTESTLSMEVPNPIFIEINKGEADIEQVLKDVLALTKLNYNACIYADGVPVTLRFADKIGEILTASTELKAPPLAFKYYI
Short prokaryotic Argonaute F 507 Bacillales Bacterium MKELIYIHEPNILFANGQKCADPRDGLALFGPFTKIYGIKSGVVGTQYGLSIFKNYINHIQKPIYNANNITRPMFPGFEAVFGCKWDADNVVFKEVTKEEIEKILYTESNHKRTYDLVSLFINKIITANKNEDEKVDVWFLVIPDEIYQYCRPNSVLPKDLVQTKSLITKSKAKSFRYEPTLFENINKELKEQEKEAITYNYDAQFHDQLKARLLEHTIPTQILRESTLAWRDFKNKFGAPKRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDIRSGVCYLGLVYKQIEKSSNPKNACCAAQMFLDNGDGTVFKGEVGPWYNQEKHEFHLNPKEAKALLTQALNSYKEQNGVFPKEIFIHAKTKFNGQEWNAFQEVTPEGTNLVGVTITKTKPLKLFKSEGNYPIMRGNAFIVNERSAFLWTVGYVPKTESTLSMEVPNPIFIEINKGEADIEQVLKDVLALTKLNYNACIYADGVPVTLRFADKIGEILTASTELKAPPLAFKYYI
Short prokaryotic Argonaute J 507 Bacillales Bacterium MKELIYIHEPNILFANGQKCADPRDGLALFGPFTKIYGIKSGVVGTQYGLSIFKNYINHIQKPIYNANNITRPMFPGFEAVFGCKWDADNVVFKEVTKEEIEKILYTESNHKRTYDLVSLFINKIITANKNEDEKVDVWFLVIPDEIYQYCRPNSVLPKDLVQTKSLITKSKAKSFRYEPTLFENINKELKEQEKEAITYNYDAQFHDQLKARLLEHTIPTQILRESTLAWRDFKNKFGAPKRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDIRSGVCYLGLVYKQIEKSSNPKNACCAAQMFLDNGDGTVFKGEVGPWYNQEKHEFHLNPKEAKALLTQALNSYKEQNGVFPKEIFIHAKTKFNGQEWNAFQEVTPEGTNLVGVTITKTKPLKLFKSEGNYPIMRGNAFIVNERSAFLWTVGYVPKTESTLSMEVPNPIFIEINKGEADIEQVLKDVLALTKLNYNACIYADGVPVTLRFADKIGEILTASTELKAPPLAFKYYI
Short prokaryotic Argonaute N 507 Bacillales Bacterium MKELIYIHEPNILFANGQKCADPRDGLALFGPFTKIYGIKSGVVGTQYGLSIFKNYINHIQKPIYNANNITRPMFPGFEAVFGCKWDADNVVFKEVTKEEIEKILYTESNHKRTYDLVSLFINKIITANKNEDEKVDVWFLVIPDEIYQYCRPNSVLPKDLVQTKSLITKSKAKSFRYEPTLFENINKELKEQEKEAITYNYDAQFHDQLKARLLEHTIPTQILRESTLAWRDFKNKFGAPKRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDIRSGVCYLGLVYKQIEKSSNPKNACCAAQMFLDNGDGTVFKGEVGPWYNQEKHEFHLNPKEAKALLTQALNSYKEQNGVFPKEIFIHAKTKFNGQEWNAFQEVTPEGTNLVGVTITKTKPLKLFKSEGNYPIMRGNAFIVNERSAFLWTVGYVPKTESTLSMEVPNPIFIEINKGEADIEQVLKDVLALTKLNYNACIYADGVPVTLRFADKIGEILTASTELKAPPLAFKYYI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3') c 21 NA UGACGGCUCUAAUCUAUUAGU
RNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3') g 21 NA UGACGGCUCUAAUCUAUUAGU
RNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3') k 21 NA UGACGGCUCUAAUCUAUUAGU
RNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3') o 21 NA UGACGGCUCUAAUCUAUUAGU
DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*AP*TP*TP*AP*GP*AP*GP*CP*CP*GP*TP*C)-3') d 25 NA CAACTAATAGATTAGAGCCGTCAAT
DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*AP*TP*TP*AP*GP*AP*GP*CP*CP*GP*TP*C)-3') h 25 NA CAACTAATAGATTAGAGCCGTCAAT
DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*AP*TP*TP*AP*GP*AP*GP*CP*CP*GP*TP*C)-3') l 25 NA CAACTAATAGATTAGAGCCGTCAAT
DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*AP*TP*TP*AP*GP*AP*GP*CP*CP*GP*TP*C)-3') p 25 NA CAACTAATAGATTAGAGCCGTCAAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-09-20
Deposition Author(s): Finocchio, G. , Heijstek, C. , Jinek, M. , Koopal, B. , Potocnik, A. , Swarts, D.