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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8QJA

T6ss-linked rhs repeat protein - advenella mimigardefordensis vgrg-rhs core

PDB DOI: 10.2210/pdb8qja/pdb

Classification: CELL INVASION
Organism(s): Advenella Mimigardefordensis Dpn7

Deposited: 2023-09-13
Deposition Author(s): Kielkopf, C.S. , Leiman, P.G. , Shneider, M.M. , Taylor, N.M.I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.36 Å

8qja
Literature

T6ss-linked rhs repeat protein - advenella mimigardefordensis vgrg-rhs core

Kielkopf, C.S. , Leiman, P.G. , Shneider, M.M. , Taylor, N.M.I.

Primary Citation of Related Structures: 8QJA


Proteins
Molecule Chains Sequence Length Organism Sequence
Putative type VI secretion system YD repeat-containing Rhs element Vgr protein A 1879 Advenella Mimigardefordensis Dpn7 GSGSMNRTVNATTPLGDKLKFKSLKGHEQLSDLFEWTVEFVSDSPGLVLEDLLGKTISLEVETSAAPRYMHGVITAFKLVHRETQTRRYYIYEATVRPWLWYSTQVTDNRIFQDQTAVQIITQVLQAYDYPIENRLVGQYRKWGYSVQFQESDFNFISRLMEHEGIYYWFRHEKDQHVLVLMDDAHSHAPLPVMPDIPFYPDDTRSVPLEEYIRDWQIAGELTPTTYSTMDYDFQKPQAEMSARRWVKNQNTQGLDLDWYDPMGGYVDSADSDHYARVHLESMQCLQEQAWAVSNVRNLAPGYTFSLKYYPNSEENKSYLILRAEYDFRDPSYASAGGVQENATFVIRSQHIPASVQFRAPRSTPAPRMSGPQTATVVGPDGQEIWTDKYGRIKVQFHWDRQGAMDENSSCWLRVSSPWAGGGFGGVQIPRVREEVVVDFINGDVDRPIAVGRVYNASNMPPVSLPENATQSGFLTRTKNGTPENANKMLFEDSQGNELLSMVAEKDMNTHVKNNQQHDVVGNAVSSIGGLRSHTAHSTSSITMASGAVKSYQSNHNRTVQASLDDSVGGNLEQTLSDGVDETITGAHSHTVSGAASHQLLGLHVNTTTQDVETVNGTVTETVSADETTNVTSSSELEAADITLETPSLYKESTKQDININAGGSLDIQSTGPGIIQTPTDIEKESPANLEAAVMLDNNTVNREDKYILKLNLDAMSDVMVSGAKTDRNIADLAFYGMGGTMQLANVGIYGASIQMGSSDQKMGLASLSITGLELDKGFKIKTMGAGGRSGYKGKHRAAGGGRGPRGGKGGRHRAGNKGDPKKPHADCKECRGRVGGSIGLDVGDERFSHLDFVLPGVFPLEWNRTYRSNMTAKDGQGELGPRWITAFTLVVLPLETGGYEYISEVGRAVSVIELEPGQEWYDRTEELIWRRPDVDTLEVSQKYQRTETFERSGDVFRLKTIADRAGNQAQLIYDAENGFLVRVETAIQTVHLDHDAHGRITTIWHEVTGDDGTPLRRTLARYQYDEAHDLVAAVDQYERTHTYAYQNHLITRYSDKTGRGINLEWDGDHPQAKCVREYRDDGSNLLRFRWDESESKTYVTDALSATTVYTFDAHNYIIHIDFADGTRQSRIRDEFHNIVEVRYPDDSFEKYEYDEFDNILKLTRADHTTVGWEYDQYSQITKIVDPGGNIWTRDYDQFGNMIRETDPKGHTSEFQYTAEGLLIQSVNPAGGVSTLSYNPAGLLIRYSDCSNKTRRWEYDLLGRTVKQTDPCGNAESYEYNRYGFINEVRRPDGSVLTLDFDEEGRLLSFIDPIDNLTVYAYDGAGRLARKTDPLKQDFHYNYDKKGRLASLQDENGAQFTFQFDPVDRLIRTVGFDGKVKKYNYDKPTGLLFSMEDADRETHFEYDVMGQLLKRRAGHLVDSFEYDISNRIIRAHNEYCDQHFEYDVLNNPIRETHIYNAFGQNREYVWENEFDELSNRLTTRRPSGEKVSWLRYGAGHVHGILLDDQEVLSFERDNSHRAVRKRQSNSLLAVTNYDVMGRVKEQKLNLAQGNRTNLRSRQYAYGLDGSLVAIEDSRHGTTTYRYDALDRLVSATAFNETELFAFDPASNLVDRDKTERSKPANTFPKNVSKVLGNILKRCAGMHFEYDAQGNLIRKRKPDSLQEFEWDEFGRLRKTVNTDLNSKHVSEAEYIYDTFDRRIGKVNQQETSGAAVTFYGWDGHHLAFEESTVGDAVDKTHYLYEENSFVPLIQYQYSADNTIAEGRNHLSVSHYQCDHIGTPQLLTDDNGHIVWEGRYSALGKQLDSIGGDAGVAGGQNNLCYQGQYYDRESGLHYNRFRYYDPDIGRFIQQDPIGLFGDSNFYTYAPNTANWIDPFGL
Putative type VI secretion system YD repeat-containing Rhs element Vgr protein B 1879 Advenella Mimigardefordensis Dpn7 GSGSMNRTVNATTPLGDKLKFKSLKGHEQLSDLFEWTVEFVSDSPGLVLEDLLGKTISLEVETSAAPRYMHGVITAFKLVHRETQTRRYYIYEATVRPWLWYSTQVTDNRIFQDQTAVQIITQVLQAYDYPIENRLVGQYRKWGYSVQFQESDFNFISRLMEHEGIYYWFRHEKDQHVLVLMDDAHSHAPLPVMPDIPFYPDDTRSVPLEEYIRDWQIAGELTPTTYSTMDYDFQKPQAEMSARRWVKNQNTQGLDLDWYDPMGGYVDSADSDHYARVHLESMQCLQEQAWAVSNVRNLAPGYTFSLKYYPNSEENKSYLILRAEYDFRDPSYASAGGVQENATFVIRSQHIPASVQFRAPRSTPAPRMSGPQTATVVGPDGQEIWTDKYGRIKVQFHWDRQGAMDENSSCWLRVSSPWAGGGFGGVQIPRVREEVVVDFINGDVDRPIAVGRVYNASNMPPVSLPENATQSGFLTRTKNGTPENANKMLFEDSQGNELLSMVAEKDMNTHVKNNQQHDVVGNAVSSIGGLRSHTAHSTSSITMASGAVKSYQSNHNRTVQASLDDSVGGNLEQTLSDGVDETITGAHSHTVSGAASHQLLGLHVNTTTQDVETVNGTVTETVSADETTNVTSSSELEAADITLETPSLYKESTKQDININAGGSLDIQSTGPGIIQTPTDIEKESPANLEAAVMLDNNTVNREDKYILKLNLDAMSDVMVSGAKTDRNIADLAFYGMGGTMQLANVGIYGASIQMGSSDQKMGLASLSITGLELDKGFKIKTMGAGGRSGYKGKHRAAGGGRGPRGGKGGRHRAGNKGDPKKPHADCKECRGRVGGSIGLDVGDERFSHLDFVLPGVFPLEWNRTYRSNMTAKDGQGELGPRWITAFTLVVLPLETGGYEYISEVGRAVSVIELEPGQEWYDRTEELIWRRPDVDTLEVSQKYQRTETFERSGDVFRLKTIADRAGNQAQLIYDAENGFLVRVETAIQTVHLDHDAHGRITTIWHEVTGDDGTPLRRTLARYQYDEAHDLVAAVDQYERTHTYAYQNHLITRYSDKTGRGINLEWDGDHPQAKCVREYRDDGSNLLRFRWDESESKTYVTDALSATTVYTFDAHNYIIHIDFADGTRQSRIRDEFHNIVEVRYPDDSFEKYEYDEFDNILKLTRADHTTVGWEYDQYSQITKIVDPGGNIWTRDYDQFGNMIRETDPKGHTSEFQYTAEGLLIQSVNPAGGVSTLSYNPAGLLIRYSDCSNKTRRWEYDLLGRTVKQTDPCGNAESYEYNRYGFINEVRRPDGSVLTLDFDEEGRLLSFIDPIDNLTVYAYDGAGRLARKTDPLKQDFHYNYDKKGRLASLQDENGAQFTFQFDPVDRLIRTVGFDGKVKKYNYDKPTGLLFSMEDADRETHFEYDVMGQLLKRRAGHLVDSFEYDISNRIIRAHNEYCDQHFEYDVLNNPIRETHIYNAFGQNREYVWENEFDELSNRLTTRRPSGEKVSWLRYGAGHVHGILLDDQEVLSFERDNSHRAVRKRQSNSLLAVTNYDVMGRVKEQKLNLAQGNRTNLRSRQYAYGLDGSLVAIEDSRHGTTTYRYDALDRLVSATAFNETELFAFDPASNLVDRDKTERSKPANTFPKNVSKVLGNILKRCAGMHFEYDAQGNLIRKRKPDSLQEFEWDEFGRLRKTVNTDLNSKHVSEAEYIYDTFDRRIGKVNQQETSGAAVTFYGWDGHHLAFEESTVGDAVDKTHYLYEENSFVPLIQYQYSADNTIAEGRNHLSVSHYQCDHIGTPQLLTDDNGHIVWEGRYSALGKQLDSIGGDAGVAGGQNNLCYQGQYYDRESGLHYNRFRYYDPDIGRFIQQDPIGLFGDSNFYTYAPNTANWIDPFGL
Putative type VI secretion system YD repeat-containing Rhs element Vgr protein C 1879 Advenella Mimigardefordensis Dpn7 GSGSMNRTVNATTPLGDKLKFKSLKGHEQLSDLFEWTVEFVSDSPGLVLEDLLGKTISLEVETSAAPRYMHGVITAFKLVHRETQTRRYYIYEATVRPWLWYSTQVTDNRIFQDQTAVQIITQVLQAYDYPIENRLVGQYRKWGYSVQFQESDFNFISRLMEHEGIYYWFRHEKDQHVLVLMDDAHSHAPLPVMPDIPFYPDDTRSVPLEEYIRDWQIAGELTPTTYSTMDYDFQKPQAEMSARRWVKNQNTQGLDLDWYDPMGGYVDSADSDHYARVHLESMQCLQEQAWAVSNVRNLAPGYTFSLKYYPNSEENKSYLILRAEYDFRDPSYASAGGVQENATFVIRSQHIPASVQFRAPRSTPAPRMSGPQTATVVGPDGQEIWTDKYGRIKVQFHWDRQGAMDENSSCWLRVSSPWAGGGFGGVQIPRVREEVVVDFINGDVDRPIAVGRVYNASNMPPVSLPENATQSGFLTRTKNGTPENANKMLFEDSQGNELLSMVAEKDMNTHVKNNQQHDVVGNAVSSIGGLRSHTAHSTSSITMASGAVKSYQSNHNRTVQASLDDSVGGNLEQTLSDGVDETITGAHSHTVSGAASHQLLGLHVNTTTQDVETVNGTVTETVSADETTNVTSSSELEAADITLETPSLYKESTKQDININAGGSLDIQSTGPGIIQTPTDIEKESPANLEAAVMLDNNTVNREDKYILKLNLDAMSDVMVSGAKTDRNIADLAFYGMGGTMQLANVGIYGASIQMGSSDQKMGLASLSITGLELDKGFKIKTMGAGGRSGYKGKHRAAGGGRGPRGGKGGRHRAGNKGDPKKPHADCKECRGRVGGSIGLDVGDERFSHLDFVLPGVFPLEWNRTYRSNMTAKDGQGELGPRWITAFTLVVLPLETGGYEYISEVGRAVSVIELEPGQEWYDRTEELIWRRPDVDTLEVSQKYQRTETFERSGDVFRLKTIADRAGNQAQLIYDAENGFLVRVETAIQTVHLDHDAHGRITTIWHEVTGDDGTPLRRTLARYQYDEAHDLVAAVDQYERTHTYAYQNHLITRYSDKTGRGINLEWDGDHPQAKCVREYRDDGSNLLRFRWDESESKTYVTDALSATTVYTFDAHNYIIHIDFADGTRQSRIRDEFHNIVEVRYPDDSFEKYEYDEFDNILKLTRADHTTVGWEYDQYSQITKIVDPGGNIWTRDYDQFGNMIRETDPKGHTSEFQYTAEGLLIQSVNPAGGVSTLSYNPAGLLIRYSDCSNKTRRWEYDLLGRTVKQTDPCGNAESYEYNRYGFINEVRRPDGSVLTLDFDEEGRLLSFIDPIDNLTVYAYDGAGRLARKTDPLKQDFHYNYDKKGRLASLQDENGAQFTFQFDPVDRLIRTVGFDGKVKKYNYDKPTGLLFSMEDADRETHFEYDVMGQLLKRRAGHLVDSFEYDISNRIIRAHNEYCDQHFEYDVLNNPIRETHIYNAFGQNREYVWENEFDELSNRLTTRRPSGEKVSWLRYGAGHVHGILLDDQEVLSFERDNSHRAVRKRQSNSLLAVTNYDVMGRVKEQKLNLAQGNRTNLRSRQYAYGLDGSLVAIEDSRHGTTTYRYDALDRLVSATAFNETELFAFDPASNLVDRDKTERSKPANTFPKNVSKVLGNILKRCAGMHFEYDAQGNLIRKRKPDSLQEFEWDEFGRLRKTVNTDLNSKHVSEAEYIYDTFDRRIGKVNQQETSGAAVTFYGWDGHHLAFEESTVGDAVDKTHYLYEENSFVPLIQYQYSADNTIAEGRNHLSVSHYQCDHIGTPQLLTDDNGHIVWEGRYSALGKQLDSIGGDAGVAGGQNNLCYQGQYYDRESGLHYNRFRYYDPDIGRFIQQDPIGLFGDSNFYTYAPNTANWIDPFGL
Putative type VI secretion system YD repeat-containing Rhs element Vgr protein D 1879 Advenella Mimigardefordensis Dpn7 GSGSMNRTVNATTPLGDKLKFKSLKGHEQLSDLFEWTVEFVSDSPGLVLEDLLGKTISLEVETSAAPRYMHGVITAFKLVHRETQTRRYYIYEATVRPWLWYSTQVTDNRIFQDQTAVQIITQVLQAYDYPIENRLVGQYRKWGYSVQFQESDFNFISRLMEHEGIYYWFRHEKDQHVLVLMDDAHSHAPLPVMPDIPFYPDDTRSVPLEEYIRDWQIAGELTPTTYSTMDYDFQKPQAEMSARRWVKNQNTQGLDLDWYDPMGGYVDSADSDHYARVHLESMQCLQEQAWAVSNVRNLAPGYTFSLKYYPNSEENKSYLILRAEYDFRDPSYASAGGVQENATFVIRSQHIPASVQFRAPRSTPAPRMSGPQTATVVGPDGQEIWTDKYGRIKVQFHWDRQGAMDENSSCWLRVSSPWAGGGFGGVQIPRVREEVVVDFINGDVDRPIAVGRVYNASNMPPVSLPENATQSGFLTRTKNGTPENANKMLFEDSQGNELLSMVAEKDMNTHVKNNQQHDVVGNAVSSIGGLRSHTAHSTSSITMASGAVKSYQSNHNRTVQASLDDSVGGNLEQTLSDGVDETITGAHSHTVSGAASHQLLGLHVNTTTQDVETVNGTVTETVSADETTNVTSSSELEAADITLETPSLYKESTKQDININAGGSLDIQSTGPGIIQTPTDIEKESPANLEAAVMLDNNTVNREDKYILKLNLDAMSDVMVSGAKTDRNIADLAFYGMGGTMQLANVGIYGASIQMGSSDQKMGLASLSITGLELDKGFKIKTMGAGGRSGYKGKHRAAGGGRGPRGGKGGRHRAGNKGDPKKPHADCKECRGRVGGSIGLDVGDERFSHLDFVLPGVFPLEWNRTYRSNMTAKDGQGELGPRWITAFTLVVLPLETGGYEYISEVGRAVSVIELEPGQEWYDRTEELIWRRPDVDTLEVSQKYQRTETFERSGDVFRLKTIADRAGNQAQLIYDAENGFLVRVETAIQTVHLDHDAHGRITTIWHEVTGDDGTPLRRTLARYQYDEAHDLVAAVDQYERTHTYAYQNHLITRYSDKTGRGINLEWDGDHPQAKCVREYRDDGSNLLRFRWDESESKTYVTDALSATTVYTFDAHNYIIHIDFADGTRQSRIRDEFHNIVEVRYPDDSFEKYEYDEFDNILKLTRADHTTVGWEYDQYSQITKIVDPGGNIWTRDYDQFGNMIRETDPKGHTSEFQYTAEGLLIQSVNPAGGVSTLSYNPAGLLIRYSDCSNKTRRWEYDLLGRTVKQTDPCGNAESYEYNRYGFINEVRRPDGSVLTLDFDEEGRLLSFIDPIDNLTVYAYDGAGRLARKTDPLKQDFHYNYDKKGRLASLQDENGAQFTFQFDPVDRLIRTVGFDGKVKKYNYDKPTGLLFSMEDADRETHFEYDVMGQLLKRRAGHLVDSFEYDISNRIIRAHNEYCDQHFEYDVLNNPIRETHIYNAFGQNREYVWENEFDELSNRLTTRRPSGEKVSWLRYGAGHVHGILLDDQEVLSFERDNSHRAVRKRQSNSLLAVTNYDVMGRVKEQKLNLAQGNRTNLRSRQYAYGLDGSLVAIEDSRHGTTTYRYDALDRLVSATAFNETELFAFDPASNLVDRDKTERSKPANTFPKNVSKVLGNILKRCAGMHFEYDAQGNLIRKRKPDSLQEFEWDEFGRLRKTVNTDLNSKHVSEAEYIYDTFDRRIGKVNQQETSGAAVTFYGWDGHHLAFEESTVGDAVDKTHYLYEENSFVPLIQYQYSADNTIAEGRNHLSVSHYQCDHIGTPQLLTDDNGHIVWEGRYSALGKQLDSIGGDAGVAGGQNNLCYQGQYYDRESGLHYNRFRYYDPDIGRFIQQDPIGLFGDSNFYTYAPNTANWIDPFGL
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-09-13
Deposition Author(s): Kielkopf, C.S. , Leiman, P.G. , Shneider, M.M. , Taylor, N.M.I.