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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8QBY

Respiratory complex i from paracoccus denitrificans in msp2n2 nanodiscs

PDB DOI: 10.2210/pdb8qby/pdb

Classification: OXIDOREDUCTASE
Organism(s): Paracoccus Denitrificans Pd1222

Deposited: 2023-08-25
Deposition Author(s): Bridges, H.R. , Hirst, J. , Ivanov, B.S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.3 Å

Literature

Respiratory complex i from paracoccus denitrificans in msp2n2 nanodiscs

Bridges, H.R. , Hirst, J. , Ivanov, B.S.

Primary Citation of Related Structures: 8QBY


Proteins
Molecule Chains Sequence Length Organism Sequence
NADH-quinone oxidoreductase subunit K K 101 Paracoccus Denitrificans Pd1222 MIGLTHYLVVGAILFVTGIFGIFVNRKNVIVILMSIELMLLAVNINFVAFSTHLGDLAGQVFTMFVLTVAAAEAAIGLAILVVFFRNRGTIAVEDVNVMKG
ETC complex I subunit conserved region Q 103 Paracoccus Denitrificans Pd1222 MRVRIYKPARNAMQSGTARTRNWVLDFPPADPRAIDPLMGWTSSDDTQSQVRLRFETRKQAEDYAREHGLDYEVIEPHTRAANIRPRGYGENFASDRRAPWTH
NADH-quinone oxidoreductase subunit A A 121 Paracoccus Denitrificans Pd1222 MEYLLQEYLPILVFLGMASALAIVLILAAAVIAVRNPDPEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEVAFLFPWAVSFASLSDVAFWGMMVFLAVLTVGFAYEWKKGALEWA
NADH-quinone oxidoreductase chain 10 J 200 Paracoccus Denitrificans Pd1222 MMTFAFYLFAISACVAGFMVVIGRNPVHSVLWLILAFLSAAGLFVLQGAEFVAMLLVVVYVGAVAVLFLFVVMMLDVDFAELKGELARYLPLALVIGVVLLAQLGIAFSGWTPSDQAESLRAAPVDAAVENTLGLGLVLYDRYVLMFQLAGLVLLVAMIGAIVLTMRHRKDVKRQNVLEQMWRDPAKTMELKDVKPGQGL
Zinc finger CHCC-type domain-containing protein R 62 Paracoccus Denitrificans Pd1222 MTIPAPEIQTVTSWKVACDGDEARGLGHPRVWLAIPRDTGWVECGYCDKRFVIDREHAHDDH
NADH-quinone oxidoreductase subunit C C 208 Paracoccus Denitrificans Pd1222 MSEALSDEALLELAEHIALRRENDVISTQVAFGELTVNATLSGVIGLIEFLRNDPNCRFSTLIDITAVDNPARPARFDVVYHLLSMYQNQRIRVKVQVREDELVPSLIGVFPGANWYEREVFDLFGILFSGHSDLRRILTDYGFRGHPLRKDFPTTGYVEVRWSDIEKRVVYEPVNLVQEYRQFDFLSPWEGAKYVLPGDEKAPEAKK
NADH-quinone oxidoreductase subunit B B 175 Paracoccus Denitrificans Pd1222 MMTGLNTAGADRDLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTLVR
NADH dehydrogenase subunit L L 703 Paracoccus Denitrificans Pd1222 MEKFVLFAPLIASLIAGLGWRAIGEKAAQYLTTGVLFLSCLISWYLFLSFDGVPRHIPVLDWVVTGDFHAEWAIRLDRLTAIMLIVVTTVSALVHMYSLGYMAHDDNWTHDEHYKARFFAYLSFFTFAMLMLVTADNLLQMFFGWEGVGVASYLLIGFYYKKASANAAAMKAFIVNRVGDFGFLLGIFGIYWLTGSVQFDEIFRQVPQLAQTEMHFLWRDWNAANLLGFLLFVGAMGKSAQLLLHTWLPDAMEGPTPVSALIHAATMVTAGVFLVCRMSPLYEFAPDAKNFIVIIGATTAFFAATVGLVQNDIKRVIAYSTCSQLGYMFVAAGVGVYSAAMFHLLTHAFFKAMLFLGAGSVIHAMHHEQDMRNYGGLRKKIPLTFWAMMIGTFAITGVGIPLTHLGFAGFLSKDAIIESAYAGSGYAFWLLVIAACFTSFYSWRLIFLTFYGKPRGDHHAHDHAHESPPVMTIPLGVLAIGAVFAGMVWYGPFFGDHHKVTEYFHIAGAHHEAAEGEEAEHATAEAPVEHAVADTATAEGEAAAEAEHAEIAAPVGGAIYMHPDNHIMDEAHHAPAWVKVSPFVAMVLGLITAWTFYIANPSLPRRLAAQQPALYRFLLNKWYFDEIYEFIFVRPAKWLGRVLWKGGDGAVIDGTINGVAMGLIPRLTRAAVRVQSGYLFHYAFAMVLGIVGLLIWVMMRGAH
NADH dehydrogenase subunit M M 513 Paracoccus Denitrificans Pd1222 MTNLLSIITFLPIVAAIIMALFLRGQDEAAARNAKWLALLTTTATFVISLFVLFRFDPANTGFQFVEDHAWIMGLRYKMGVDGISVLFVLLTTFMMPLTILSTWQVQDKVKEYMIAFLVLEGLMIGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMIAMYRMAGTTDIPTLLTFDFPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVALAQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDGAIFQMLSHGFISGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGVFRVDTWVALVATSGVILSAAYALWLYRRVTLGQLIKESLKSITDMTPRERWVFIPLIAMTLILGVYPRLVTDVTGPAVAALVQDYNQSQPAAPVATAQASH
NADH-quinone oxidoreductase G 674 Paracoccus Denitrificans Pd1222 MADLRKIKIDDTIIEVDPNMTLIQACEMAGIEVPRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQVKDLRPGPEGAPSEIRTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDFSRYREPKRATEDLNLGPLVETHMTRCISCTRCVRFTTEVAGITQMGQTGRGEDSEITSYLNQTLESNMQGNIIDLCPVGALVSKPYAFTARPWELTKTESIDVMDALGSSIRIDTKGREVMRILPRNHDGVNEEWISDKTRFVWDGLRRQRLDRPYIRENGRLRPASWPEALEAAARAMKGKKIAGLIGDLVPAEAAFSLKQLVEGLGGKVECRVDGARLPAGNRSAYVGTARIEDIDDAEMIQLIGTNPRDEAPVLNARIRKAWSKGAKVGLVGEPVDLTYDYAHVGTDRAALESLSSREISDETKARPSIVIVGQGAIREADGEAVLAHAMKLAENSNSGLLILHTAAGRVGAMDVGAVTEGGLLAAIDGAEVVYNLGADEVDIDQGPFVIYQGSHGDRGAHRADIILPGACYTEESGLFVNTEGRPQLAMRANFAPGEGKENWAILRALSAELGATQPWDSLAGLRRKLVEAVPHLAQIDQVPQNEWQPLGRFDLGQASFRYAIRDFYLTNPIARSSPLMGELSAMAAARKAPAPLAAE
Protein-L-isoaspartate O-methyltransferase T 217 Paracoccus Denitrificans Pd1222 MTDFAQRRTMMVDTQVRPNEVTSYPVIEAMLNVPREQFVPESRRDVAYVGNNIDLAPGRVLLEPRTLGKMMDILNLQNGDLVLDVGCGYGYSAAVMARIAEAVVAVEEDAAMAAEAEGRLAAQDVFNVAVVQGALAEGCPGQAPYDAILIEGAVEQVPEALTEQLREGGRIVALFREGNLGIVRLGHKLDGRVNWRFAFNAVAPLLPGFARPRGFVL
NADH-quinone oxidoreductase subunit I I 163 Paracoccus Denitrificans Pd1222 MAFDFARATKYFLMWDFIKGFGLGMRYFVSPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELFYDKQKLLANGERWEAEIARNLQLDAPYR
NADH dehydrogenase subunit E E 239 Paracoccus Denitrificans Pd1222 MLRRLSPIQPDSFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIEYCADLLGMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAEDLIRVCKEKIAPEPHALSADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGEVPVPGPQNGRFSAEALGGPTALADLKGGEAHNASVARALRLGDSIKRIDGTEVPITTPWLATQNGV
NADH-quinone oxidoreductase subunit N N 499 Paracoccus Denitrificans Pd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
NADH-quinone oxidoreductase subunit H H 345 Paracoccus Denitrificans Pd1222 MAEFWASPYGFALSMLLQGLAVIAFVMGSLIFMVYGDRKIWAAVQMRRGPNVVGPWGLLQTFADALKYIVKEIVIPAGADKFVYFLAPFLSMMLALFAFVVIPFDEGWVMANINVGILFIFAASSLEVYGVIMGGWASNSKYPFLASLRSAAQMISYEVSLGLIIIGIIISTGSMNLTAIVEAQRGDYGLLNWYWLPHLPMVVLFFVSALAECNRPPFDLVEAESELVAGFMTEYSSTPYLLFMAGEYIAMYLMCALLSLLFFGGWLSPVPFIADGWWWMVIKMWFWFYMFAMVKAIVPRYRYDQLMRIGWKVFLPLSLGWVVLVAILARYEILGGFWARFAVGG
NADH-quinone oxidoreductase subunit F F 431 Paracoccus Denitrificans Pd1222 MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGFPTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHAAYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALLESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGVKLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCENAIMDYDGMRELRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMMRVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKAKRTGRMGAMAAE
NADH-quinone oxidoreductase subunit D D 412 Paracoccus Denitrificans Pd1222 MDGDIRKNSYDDGSMDALTGEQSIRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMDVGALTPPLWGFEAREELMIFYERACGARLHAAYFRPGGVHQDLPPDLLDDIEEWCERFPKLVDDLDTLLTENRIFKQRLVDIGIVTEADALDWGYTGVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGRNGDCYDRYLCRMAEMRESCKIMQQAVQKLRAEPAGDVLARGKLTPPRRAEMKRDMESLIHHFKLYTEGFKVPAGEVYAAVEAPKGEFGVYLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHMLADVPAIIATLDIVFGEVDR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-08-25
Deposition Author(s): Bridges, H.R. , Hirst, J. , Ivanov, B.S.