8Q4D
Ista-istb(e167q) strand transfer complex
PDB DOI: 10.2210/pdb8q4d/pdb
Classification: DNA BINDING PROTEIN
Organism(s): Geobacillus Stearothermophilus , Synthetic Construct
Deposited: 2023-08-06
Deposition Author(s): Araujo-Bazan, L. , Arias-Palomo, E. , Berger, J.M. , De La Gandara, A. , Nunez-Ramirez, R. , Spinola-Amilibia, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Ista-istb(e167q) strand transfer complex
Araujo-Bazan, L. , Arias-Palomo, E. , Berger, J.M. , De La Gandara, A. , Nunez-Ramirez, R. , Spinola-Amilibia, M.
Primary Citation of Related Structures: 8Q4D
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (118-MER) / TIR-transferred strand | a | 118 | NA | CCTTCTGGGGAATTTTAAACCGGCGATTTTGGGGAAAAAATAATCGGCCTTGACAGCTGCACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACT |
| DNA (58-MER) / TIR non-transferred strand | b | 58 | NA | TCATGTCAAGGCCGATTATTTTTTCCCCAAAATCGCCGGTTTAAAATTCCCCAGAAGG |
| DNA (58-MER) / target-reverse complement | c | 58 | NA | AGTTGGCCGCAGTGTTATCACTCATGGTTATGGCAGCACTGCATAATTCTCTTACTGT |
| DNA (118-MER) / TIR-transferred strand | d | 118 | NA | CCTTCTGGGGAATTTTAAACCGGCGATTTTGGGGAAAAAATAATCGGCCTTGACAGCTGCACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACT |
| DNA (58-MER) / TIR non-transferred strand | e | 58 | NA | TCATGTCAAGGCCGATTATTTTTTCCCCAAAATCGCCGGTTTAAAATTCCCCAGAAGG |
| DNA (58-MER) / target-reverse complement | f | 58 | NA | AGTTGGCCGCAGTGTTATCACTCATGGTTATGGCAGCACTGCATAATTCTCTTACTGT |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Insertion sequence IS5376 putative ATP-binding protein | G | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | H | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | I | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | J | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | K | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | L | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | M | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | N | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | O | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | P | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | Q | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | R | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | S | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | T | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | U | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | V | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | W | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
| Insertion sequence IS5376 putative ATP-binding protein | X | 247 | Geobacillus Stearothermophilus , Synthetic Construct | NMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDQMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEE |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-08-06
Deposition Author(s): Araujo-Bazan, L. , Arias-Palomo, E. , Berger, J.M. , De La Gandara, A. , Nunez-Ramirez, R. , Spinola-Amilibia, M.