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FASTA Sequence PDB Format mmCIF Format
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8Q3W

Atp-bound istb in complex to duplex dna

PDB DOI: 10.2210/pdb8q3w/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Geobacillus Stearothermophilus , Synthetic Construct

Deposited: 2023-08-04
Deposition Author(s): Araujo-Bazan, L. , Arias-Palomo, E. , Berger, J.M. , De La Gandara, A. , Nunez-Ramirez, R. , Spinola-Amilibia, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.18 Å

8q3w
Literature

Atp-bound istb in complex to duplex dna

Araujo-Bazan, L. , Arias-Palomo, E. , Berger, J.M. , De La Gandara, A. , Nunez-Ramirez, R. , Spinola-Amilibia, M.

Primary Citation of Related Structures: 8Q3W


Proteins
Molecule Chains Sequence Length Organism Sequence
Insertion sequence IS5376 putative ATP-binding protein A 254 Geobacillus Stearothermophilus , Synthetic Construct GPNMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQKDQ
Insertion sequence IS5376 putative ATP-binding protein B 254 Geobacillus Stearothermophilus , Synthetic Construct GPNMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQKDQ
Insertion sequence IS5376 putative ATP-binding protein C 254 Geobacillus Stearothermophilus , Synthetic Construct GPNMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQKDQ
Insertion sequence IS5376 putative ATP-binding protein D 254 Geobacillus Stearothermophilus , Synthetic Construct GPNMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQKDQ
Insertion sequence IS5376 putative ATP-binding protein E 254 Geobacillus Stearothermophilus , Synthetic Construct GPNMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQKDQ
Insertion sequence IS5376 putative ATP-binding protein F 254 Geobacillus Stearothermophilus , Synthetic Construct GPNMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQKDQ
Insertion sequence IS5376 putative ATP-binding protein G 254 Geobacillus Stearothermophilus , Synthetic Construct GPNMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQKDQ
Insertion sequence IS5376 putative ATP-binding protein H 254 Geobacillus Stearothermophilus , Synthetic Construct GPNMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQKDQ
Insertion sequence IS5376 putative ATP-binding protein I 254 Geobacillus Stearothermophilus , Synthetic Construct GPNMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQKDQ
Insertion sequence IS5376 putative ATP-binding protein J 254 Geobacillus Stearothermophilus , Synthetic Construct GPNMKERIHEYCHRLHLPVMAERWSAMAEYASTHNISYSEFLFRLLEAEIVEKQARSIQTLIKLSKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQKDQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (48-MER) Target DNA FW k 60 NA TGCTTGCGATGATCCGACGTGTTAGCCACGCTGACTAGTTATGCCATGCCTCCCTTCAGG
DNA (48-MER) Traget DNA Rv l 60 NA CCTGAAGGGAGGCATGGCATAACTAGTCAGCGTGGCTAACACGTCGGATCATCGCAAGCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-08-04
Deposition Author(s): Araujo-Bazan, L. , Arias-Palomo, E. , Berger, J.M. , De La Gandara, A. , Nunez-Ramirez, R. , Spinola-Amilibia, M.