8Q16
Cryoem structure of rice nucleosome containing a h4 variant chimera
PDB DOI: 10.2210/pdb8q16/pdb
Classification: DNA BINDING PROTEIN Organism(s): Oryza , Synthetic Construct
Deposited: 2023-07-30 Deposition Author(s): Berger, F. , Gireesh, A. , Gut, F. , Hari Sundar G, V. , Jeyaprakash, A.A. , Jha, S. , Raju, S. , Shivaprasad, P.V. , Sotelo-Parrilla, P. , Vinothkumar, K.R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.6 Å
Cryoem structure of rice nucleosome containing a h4 variant chimera
Berger, F. , Gireesh, A. , Gut, F. , Hari Sundar G, V. , Jeyaprakash, A.A. , Jha, S. , Raju, S. , Shivaprasad, P.V. , Sotelo-Parrilla, P. , Vinothkumar, K.R.
Primary Citation of Related Structures: 8Q16
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H2A.2 | A | 135 | Oryza , Synthetic Construct | MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDDDN |
| Histone H2A.2 | B | 135 | Oryza , Synthetic Construct | MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDDDN |
| Histone H2B.4 | C | 153 | Oryza , Synthetic Construct | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKAEKGSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
| Histone H2B.4 | D | 153 | Oryza , Synthetic Construct | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKAEKGSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
| Histone H3.2 | E | 136 | Oryza , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3.2 | F | 136 | Oryza , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Chimeric H4.V | G | 103 | Oryza , Synthetic Construct | MAPRSVAISGRGTSGARRHRIVFRGYIQGIAKPVIRRLARKGGVKRISGLIYKETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG |
| Chimeric H4.V | H | 103 | Oryza , Synthetic Construct | MAPRSVAISGRGTSGARRHRIVFRGYIQGIAKPVIRRLARKGGVKRISGLIYKETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| WIDOM 601 | i | 147 | NA | ACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAG |
| WIDOM 601 | j | 147 | NA | CTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGT |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-07-30 Deposition Author(s): Berger, F. , Gireesh, A. , Gut, F. , Hari Sundar G, V. , Jeyaprakash, A.A. , Jha, S. , Raju, S. , Shivaprasad, P.V. , Sotelo-Parrilla, P. , Vinothkumar, K.R.