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8PVV

Archaeoglobus fulgidus afago complex with afago-n protein (fafago) bound with 30 nt rna guide and 51 nt dna target

PDB DOI: 10.2210/pdb8pvv/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Mimivirus Reunion , Sin Nombre Orthohantavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-07-18
Deposition Author(s): Golovinas, E. , Manakova, E.N. , Pocevicuite, R. , Sasnauskas, G. , Silanskas, A. , Zagorskaite, E. , Zaremba, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.81 Å

8pvv
Literature

Archaeoglobus fulgidus afago complex with afago-n protein (fafago) bound with 30 nt rna guide and 51 nt dna target

Golovinas, E. , Manakova, E.N. , Pocevicuite, R. , Sasnauskas, G. , Silanskas, A. , Zagorskaite, E. , Zaremba, M.

Primary Citation of Related Structures: 8PVV


Proteins
Molecule Chains Sequence Length Organism Sequence
Piwi protein A 427 Mimivirus Reunion , Sin Nombre Orthohantavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MMEYKIVENGLTYRIGNGASVPISNTGELIKGLRNYGPYEVPSLKYNQIALIHNNQFSSLINQLKSQISSKIDEVWHIHNINISEFIYDSPHFDSIKSQVDNAIDTGVDGIMLVLPEYNTPLYYKLKSYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVDPEKGSDIIIGTGATRIDNVNLFCFAMVFKKDGTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLSSKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGGYPINPEGNRSLQTNPWFL
Archaeoglobus fulgidus AfAgo-N protein C 273 Mimivirus Reunion , Sin Nombre Orthohantavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MGGSHHHHHHGMASENLYFQGGGGEIPLSSGNVNTPDVRSSGILYINIYPIVNYPETIKVSAIPYYEEFLPGKWKKRIGDLIYLYGYGIENEFDEIDNSNALFGKIFRKYLLDILSENIATPWQLKELGSTLRLVKEITENYEFSNIIKLQYELIINVHHWQNTNFGIIVDLKINILDRENNQRISYTKIKDKYGESVKKKIWVSVQAFHRHLTPEGKKYATAMRDKFNLLTGLLKEAFGSSEDEKTFSTPDGEIKIVFKPLEIVEVSNNDGI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (30-MER) r 30 NA AGGAGGGCGGAGCCUAUGGAAAAACGCCAC
DNA (51-MER) s 51 NA GCCGCGCCGGTGGCGTTTTTCCATAGGCTCCGCCCTCCTGCCAGAGTTCGC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-07-18
Deposition Author(s): Golovinas, E. , Manakova, E.N. , Pocevicuite, R. , Sasnauskas, G. , Silanskas, A. , Zagorskaite, E. , Zaremba, M.