8PSZ
Tilapia lake virus polymerase in vrna elongation state with additional mode b promoter (transcriptase conformation)
PDB DOI: 10.2210/pdb8psz/pdb
Classification: VIRAL PROTEIN Organism(s): Tilapia Lake Virus , Synthetic Construct
Deposited: 2023-07-13 Deposition Author(s): Arragain, B. , Cusack, S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.42 Å
Tilapia lake virus polymerase in vrna elongation state with additional mode b promoter (transcriptase conformation)
Primary Citation of Related Structures: 8PSZ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Polymerase acidic protein (PA-like) | A | 419 | Tilapia Lake Virus , Synthetic Construct | MDSRFAQLTGVFCDDFTYSEGSRRFLSSYSTVERRPGVPVEGDCYDCLKNKWIAFELEGQPRKFPKATVRCILNNDATYVCSEQEYQQICKVQFKDYLEIDGVVKVGHKASYDAELRERLLELPHPKSGPKPRIEWVAPPRLADISKETAELKRQYGFFECSKFLACGEECGLDQEARELILNEYARDREFEFRNGGWIQRYTVASHKPATQKILPLPASAPLARELLMLIARSTTQAGKVLHSDNTSILAVPVMRDSGKHSKRRPTASTHHLVVGLSKPGCEHDFEFDGYRAAVHVMHLDPKQSANIGEQDFVSTREIYKLDMLELPPISRKGDLDRASGLETRWDVILLLECLDSTRVSQAVAQHFNRHRLALSVCKDEFRKGYQLASEIRGTIPLSSLYYSLCAVRLRMTVHPFAR |
| Putative PB1 | B | 519 | Tilapia Lake Virus , Synthetic Construct | MWAFQEGVCKGNLLSGPTSMKAPDSAARESIDRASEIMTGKSYNAVHTGDLSKLPNQGESPLRIVDSDLYSERSCCWVIEKEGRVVCKSTTLTRGMTSLLNTTKCSSPSELICKVLTVESLSEKIGDTSVEELLSHGRYFKCALRDQERGKPKSRAIFLSHPFFRLLSSVVETHARSVLSKVSAVYTATASAEQRAMMAAQVVESRKHVLNGDCTKYNEAIDADTLLKVWDAIGMGSIGVMLAYMVRRKCVLIKDTLVECPGGMLMGMFNATATLALQGTTDRFLSFSDDFITSFNSPAELREIEDLLFASCHNLSLKKSYISVASLEINSCTLTRDGDLATGLGCTAGVPFRGPLVTLKQTAAMLSGAVDSGVMPFHSAERLFQIKQQECAYRYNNPTYTTRNEDFLPTCLGGKTVISFQSLLTWDCHPFWYQVHPDGPDTIDQKVLSVLASKTRRRRTRLEALSDLDPLVPHRLLVSESDVSKIRAARQAHLKSLGLEQPTNFNYAIYKAVQPTAGC |
| RNA-dependent RNA polymerase | C | 478 | Tilapia Lake Virus , Synthetic Construct | MSQFGKSFKGRTEVTITEYRSHTVKDVHRSLLTADKSLRKSFCFRNALNQFLDKDLPLLPIRPKLESRVAVKKSKLRSQLSFRPGLTQEEAIDLYNKGYDGDSVSGALQDRVVNEPVAYSSADNDKFHRGLAALGYTLADRAFDTCESGFVRAIPTTPCGFICCGPGSFKDSLGFVIKIGEFWHMYDGFQHFVAVEDAKFLASKSPSFWLAKRLAKRLNLVPKEDPSVAAAECPCKKVWEASFARAPTALDPFGGRAFCDQGWVYHRDVGYATANHISQETLFQQALSVRNLGPQGSANVSGSIHTALDRLRAAYSRGTPASRSILQGLANLITPVGENFECDLDKRKLNIKALRSPERYITIEGLVVNLDDVVRGFYLDKAKVTVLSRSKWMGYEDLPQKPPNGTFYCRKRKAMLLISCSPGTYAKKRKVAVQEDRFKDMRVENFREVAENMDLNQGSGSENLYFQGHHHHHHHHHH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5' vRNA end - vRNA loop (40-mer) | v | 40 | NA | GCAAAUCUUUCUCACGUCCUGACUUGUGAGUAAAAUUUGG |
| 5' vRNA end - vRNA loop (40-mer) | s | 40 | NA | GCAAAUCUUUCUCACGUCCUGACUUGUGAGUAAAAUUUGG |
| 5' vRNA end - vRNA loop (40-mer) | d | 40 | NA | GCAAAUCUUUCUCACGUCCUGACUUGUGAGUAAAAUUUGG |
| Transcription-like product | p | 21 | NA | AGAAUAUAAUACCAAAUUUUA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-07-13 Deposition Author(s): Arragain, B. , Cusack, S.