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FASTA Sequence PDB Format mmCIF Format
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8PSX

Tilapia lake virus polymerase in vrna elongation state (transcriptase conformation)

PDB DOI: 10.2210/pdb8psx/pdb

Classification: VIRAL PROTEIN
Organism(s): Tilapia Lake Virus , Synthetic Construct

Deposited: 2023-07-13
Deposition Author(s): Arragain, B. , Cusack, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.96 Å

8psx
Literature

Tilapia lake virus polymerase in vrna elongation state (transcriptase conformation)

Arragain, B. , Cusack, S.

Primary Citation of Related Structures: 8PSX


Proteins
Molecule Chains Sequence Length Organism Sequence
Polymerase acidic protein (PA-like) A 419 Tilapia Lake Virus , Synthetic Construct MDSRFAQLTGVFCDDFTYSEGSRRFLSSYSTVERRPGVPVEGDCYDCLKNKWIAFELEGQPRKFPKATVRCILNNDATYVCSEQEYQQICKVQFKDYLEIDGVVKVGHKASYDAELRERLLELPHPKSGPKPRIEWVAPPRLADISKETAELKRQYGFFECSKFLACGEECGLDQEARELILNEYARDREFEFRNGGWIQRYTVASHKPATQKILPLPASAPLARELLMLIARSTTQAGKVLHSDNTSILAVPVMRDSGKHSKRRPTASTHHLVVGLSKPGCEHDFEFDGYRAAVHVMHLDPKQSANIGEQDFVSTREIYKLDMLELPPISRKGDLDRASGLETRWDVILLLECLDSTRVSQAVAQHFNRHRLALSVCKDEFRKGYQLASEIRGTIPLSSLYYSLCAVRLRMTVHPFAR
Putative PB1 B 519 Tilapia Lake Virus , Synthetic Construct MWAFQEGVCKGNLLSGPTSMKAPDSAARESIDRASEIMTGKSYNAVHTGDLSKLPNQGESPLRIVDSDLYSERSCCWVIEKEGRVVCKSTTLTRGMTSLLNTTKCSSPSELICKVLTVESLSEKIGDTSVEELLSHGRYFKCALRDQERGKPKSRAIFLSHPFFRLLSSVVETHARSVLSKVSAVYTATASAEQRAMMAAQVVESRKHVLNGDCTKYNEAIDADTLLKVWDAIGMGSIGVMLAYMVRRKCVLIKDTLVECPGGMLMGMFNATATLALQGTTDRFLSFSDDFITSFNSPAELREIEDLLFASCHNLSLKKSYISVASLEINSCTLTRDGDLATGLGCTAGVPFRGPLVTLKQTAAMLSGAVDSGVMPFHSAERLFQIKQQECAYRYNNPTYTTRNEDFLPTCLGGKTVISFQSLLTWDCHPFWYQVHPDGPDTIDQKVLSVLASKTRRRRTRLEALSDLDPLVPHRLLVSESDVSKIRAARQAHLKSLGLEQPTNFNYAIYKAVQPTAGC
RNA-dependent RNA polymerase C 478 Tilapia Lake Virus , Synthetic Construct MSQFGKSFKGRTEVTITEYRSHTVKDVHRSLLTADKSLRKSFCFRNALNQFLDKDLPLLPIRPKLESRVAVKKSKLRSQLSFRPGLTQEEAIDLYNKGYDGDSVSGALQDRVVNEPVAYSSADNDKFHRGLAALGYTLADRAFDTCESGFVRAIPTTPCGFICCGPGSFKDSLGFVIKIGEFWHMYDGFQHFVAVEDAKFLASKSPSFWLAKRLAKRLNLVPKEDPSVAAAECPCKKVWEASFARAPTALDPFGGRAFCDQGWVYHRDVGYATANHISQETLFQQALSVRNLGPQGSANVSGSIHTALDRLRAAYSRGTPASRSILQGLANLITPVGENFECDLDKRKLNIKALRSPERYITIEGLVVNLDDVVRGFYLDKAKVTVLSRSKWMGYEDLPQKPPNGTFYCRKRKAMLLISCSPGTYAKKRKVAVQEDRFKDMRVENFREVAENMDLNQGSGSENLYFQGHHHHHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5' vRNA end - vRNA loop (40-mer) v 40 NA GCAAAUCUUUCUCACGUCCUGACUUGUGAGUAAAAUUUGG
5' vRNA end - vRNA loop (40-mer) s 40 NA GCAAAUCUUUCUCACGUCCUGACUUGUGAGUAAAAUUUGG
Transcription-like product p 21 NA AGAAUAUAAUACCAAAUUUUA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-07-13
Deposition Author(s): Arragain, B. , Cusack, S.