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8PP6

Human rybp-prc1 bound to h2ak118ub1 nucleosome

PDB DOI: 10.2210/pdb8pp6/pdb

Classification: GENE REGULATION
Organism(s): Drosophila Melanogaster , Homo Sapiens

Deposited: 2023-07-06
Deposition Author(s): Benda, C. , Ciapponi, M. , Mueller, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.18 Å

Literature

Human rybp-prc1 bound to h2ak118ub1 nucleosome

Benda, C. , Ciapponi, M. , Mueller, J.

Primary Citation of Related Structures: 8PP6


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 (Fragment) A 135 Drosophila Melanogaster , Homo Sapiens ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3 (Fragment) E 135 Drosophila Melanogaster , Homo Sapiens ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 104 Drosophila Melanogaster , Homo Sapiens MITGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 104 Drosophila Melanogaster , Homo Sapiens MITGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 123 Drosophila Melanogaster , Homo Sapiens SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA
Histone H2A G 123 Drosophila Melanogaster , Homo Sapiens SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA
Histone H2B D 123 Drosophila Melanogaster , Homo Sapiens IPPKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Histone H2B H 123 Drosophila Melanogaster , Homo Sapiens IPPKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
RING1 and YY1-binding protein K 232 Drosophila Melanogaster , Homo Sapiens GPDSMTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQLVAQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKDPPSEANSIQSANATTKTSETNHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQNQSSSGSESTDKGSSRSSTPKGDMSAVNDESF
Ubiquitin-40S ribosomal protein S27a (Fragment) M 73 Drosophila Melanogaster , Homo Sapiens MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (215-MER) i 248 NA ATATCTCGGGCTTATGTGATGGACCCTATACGCGGCGGACCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGTATTTATTGAACAGCGACTCGGGATATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGG
DNA (215-MER) j 248 NA CCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGATATCCCGAGTCGCTGTTCAATAAATACACAGGATGTATATATCTGACACGTGCCTGGAGATTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGTCCGCCGCGTATAGGGTCCATCACATAAGCCCGAGATAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-07-06
Deposition Author(s): Benda, C. , Ciapponi, M. , Mueller, J.