8PKJ
Cryo-em structure of the nucleosome containing nr5a2 motif at shl+5.5
PDB DOI: 10.2210/pdb8pkj/pdb
Classification: DNA BINDING PROTEIN Organism(s): Mus Musculus , Synthetic Construct
Deposited: 2023-06-26 Deposition Author(s): Arslantas, E. , Basquin, J. , Bollschweiler, D. , Duderstadt, K. , Hornberger, R. , Kobayashi, W. , Kummecke, M. , Ruangroengkulrith, S. , Sappler, A. , Tachibana, K.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.5 Å
Cryo-em structure of the nucleosome containing nr5a2 motif at shl+5.5
Arslantas, E. , Basquin, J. , Bollschweiler, D. , Duderstadt, K. , Hornberger, R. , Kobayashi, W. , Kummecke, M. , Ruangroengkulrith, S. , Sappler, A. , Tachibana, K.
Primary Citation of Related Structures: 8PKJ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3 (Fragment) | A | 136 | Mus Musculus , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3 (Fragment) | E | 136 | Mus Musculus , Synthetic Construct | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | B | 103 | Mus Musculus , Synthetic Construct | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 103 | Mus Musculus , Synthetic Construct | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A | C | 130 | Mus Musculus , Synthetic Construct | MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2A | G | 130 | Mus Musculus , Synthetic Construct | MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2B | D | 126 | Mus Musculus , Synthetic Construct | MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK |
| Histone H2B | H | 126 | Mus Musculus , Synthetic Construct | MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA | i | 153 | NA | ATCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTTCAAGGCCAATACATCCTGTGAT |
| DNA | j | 153 | NA | ATCACAGGATGTATTGGCCTTGAACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGAT |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-06-26 Deposition Author(s): Arslantas, E. , Basquin, J. , Bollschweiler, D. , Duderstadt, K. , Hornberger, R. , Kobayashi, W. , Kummecke, M. , Ruangroengkulrith, S. , Sappler, A. , Tachibana, K.