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8PK3

Cryoem reconstruction of hemagglutinin hk68 of influenza a virus bound to an affimer reagent

PDB DOI: 10.2210/pdb8pk3/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Influenza A Virus , Synthetic Construct

Deposited: 2023-06-24
Deposition Author(s): Debski-Antoniak, O. , Flynn, A. , Fontana, J. , Klebl, D.P. , Muench, S. , Tiede, C. , Tomlinson, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

8pk3
Literature

Cryoem reconstruction of hemagglutinin hk68 of influenza a virus bound to an affimer reagent

Debski-Antoniak, O. , Flynn, A. , Fontana, J. , Klebl, D.P. , Muench, S. , Tiede, C. , Tomlinson, D.

Primary Citation of Related Structures: 8PK3


Proteins
Molecule Chains Sequence Length Organism Sequence
Hemagglutinin HA1 chain A 322 Influenza A Virus , Synthetic Construct ADPGATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKQT
Hemagglutinin HA1 chain B 322 Influenza A Virus , Synthetic Construct ADPGATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKQT
Hemagglutinin HA1 chain C 322 Influenza A Virus , Synthetic Construct ADPGATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKQT
Hemagglutinin HA2 chain D 175 Influenza A Virus , Synthetic Construct GLFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQIKG
Hemagglutinin HA2 chain E 175 Influenza A Virus , Synthetic Construct GLFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQIKG
Hemagglutinin HA2 chain F 175 Influenza A Virus , Synthetic Construct GLFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQIKG
Affimer molecule (A31) G 87 Influenza A Virus , Synthetic Construct SLEIEELARFAVDEHNKKENALLEFVRVVKAKEQFNYDQWQDYTMYYLTLEAKDGGKKKLYEAKVWVKFVDSAFETENFKELQEFKP
Affimer molecule (A31) H 87 Influenza A Virus , Synthetic Construct SLEIEELARFAVDEHNKKENALLEFVRVVKAKEQFNYDQWQDYTMYYLTLEAKDGGKKKLYEAKVWVKFVDSAFETENFKELQEFKP
Affimer molecule (A31) I 87 Influenza A Virus , Synthetic Construct SLEIEELARFAVDEHNKKENALLEFVRVVKAKEQFNYDQWQDYTMYYLTLEAKDGGKKKLYEAKVWVKFVDSAFETENFKELQEFKP
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-06-24
Deposition Author(s): Debski-Antoniak, O. , Flynn, A. , Fontana, J. , Klebl, D.P. , Muench, S. , Tiede, C. , Tomlinson, D.