PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8PEL

Structure of c. thermophilum rna exosome core

PDB DOI: 10.2210/pdb8pel/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Thermochaetoides Thermophila Dsm 1495

Deposited: 2023-06-14
Deposition Author(s): Holdermann, I. , Lazzaretti, D. , Sprangers, R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.81 Å

Literature

Structure of c. thermophilum rna exosome core

Holdermann, I. , Lazzaretti, D. , Sprangers, R.

Primary Citation of Related Structures: 8PEL


Proteins
Molecule Chains Sequence Length Organism Sequence
Rrp45 A 293 Thermochaetoides Thermophila Dsm 1495 MPREVEPSLSERQFVLQALQEGLRLDGRQLDQYRPLSLTFGDQYGVADVTFGKTRVLAKASAEVTVPYADRPLDGIFTIATELSPMTSPTFEVNRPTETEVLLSRLLEKTIRRSGALDTESLCLVAGQKCWSIRVDVHVMSHDGNLVDAACIAVVAALRHFRKPDTSIESGVLTIYTPAEREPVPLSWLHTPFCVTWSFFGDEGEIAVLDATWLEEQVRVGSCTISMNKHGEICQIAKLGGTPVEAVSLLQCTSIALTKVKEFSDLVDKKLAEDFKRRNPGGLLKELKAENDR
Exoribonuclease phosphorolytic domain-containing protein B 284 Thermochaetoides Thermophila Dsm 1495 MPLDTSTYKLALLRVDGRRWNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGTGAGTTGGGGAGGAGGGGSGGQGKEAEVVVSIVIAGFSSVDRKRHGRNDKRIIEMQSTVANALSASLHTHLFPHSQITISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVVACTAGSTSTYAANDENADPLLDLNHQEEQELPWLTVATLGESDKVAVLVCESRVQVSRLEGMLAVGVDGCKQIRAILDHVVRQKGRRMIREGAVEKGVSLDDMDED
Exoribonuclease-like protein C 357 Thermochaetoides Thermophila Dsm 1495 MATDAASAPHSLTFPRGIFAKLSPHPYLLRTLCPDPSNSSSTPQRTNGRRPNEARPFRVNLGSLSHAHGSALVRAGDTTVLCGVRGEVLPVERIPLFRQPDVNGSGIGATVGRGELKEYDLLVPNIELATGSAPQFLPGVPPTALAQTLSTRVYSLLHSTRLVSAEELRIWYRPVATNRSKEGEDVEMEEECQEESGEEQDRVVAYWVLYIDLVFLSFDGNPFDVAWAAVVAALRDTKLPVARWDPDREMVVCSKTETMKLTIKGLPIACSAAVFLEKEHGEVAVGEKNRHWILLDPDRLEESLCKEVITMVVDFSDGETRIRAIEKQGGTVFGRELIRSFALVAEDRWKVVKEVMK
Exoribonuclease phosphorolytic domain-containing protein D 258 Thermochaetoides Thermophila Dsm 1495 MTTTTATTAPEAALGVLPRADGSARYSHAGYTVTASVNGPIEAQRRDEHPYEAHVDVIVRPAAGVGGTRERHLESILQSSFAQIILVKSFPRSLIQIVLQVEESPENEYVNTKLVQASLNFAVMPALFQTAMLALLSAGVPMRATATATAIALASENGATKTLIDPSPRQVELAQSVHVFAFTSQDELLLAESEGDFTIKEWDAAYETAKNICCRPSPTMDGVQMMAIDDDRLVGPDLRHFIRSTMEAKVATDLHWKS
Exoribonuclease phosphorolytic domain-containing protein E 413 Thermochaetoides Thermophila Dsm 1495 MSAASSQHVLLSPAELAYLHASLSLTPPIRPDGRSPTQFRPLIAETGILPGANGSARVCFADGTEAIVGVKAEVEKTVSRSKEDEEVGLLVASAGDMDVDDEEGYAKVGADNRTGEASWVEITVEIPGVRDDDSGMVFLAQLLGEALLADGEFVKKLWINRRYHWKLYIDILLISPPLSYPLPLLSLTTHLALLSTRLPRLKSEGDEDPYFDDDWAVAPYLFPRSSSASKSSKSSPTQPTTRPPITLLVMAVGNNILFDPSKEELAVADVALAVSVTATDVDPDESDAQKETATATAGPDSADAAKRGRKLRLLSIRTIDPPSRLTPPGVPNSTNPAAIYGTTSSSGTNGNGQPQQKVESGKISEPIEPIEGVWRAPRGGAKRLVLGALVQKVLEKGGVVDEVLDALEGVELT
Exosome complex component MTR3 F 284 Thermochaetoides Thermophila Dsm 1495 MTDRRRINGPAGATIPPVYEDSGISEVKALKIRSRPSNIIRKIYLKTGVTPSASGSAYLELETSANSGVSGLKLSCTVHGPRSLPRSSPFSPHMVVSTHVKYAPFATKQRRGYLRDPTERDLGIHLEAALRGAIIADRWPKSGVDIIISIIEGDQDREASKTQGDEVWDMMNTLSGCITVASAALADAGIDCVDTVAGGVAALVQDSDGSPEIVVDPIPSEHRKILAACCVAYLPMRDEVTNLWFRGDLPASDMDLYTELVEKGIQASRSANRVLVDCLTETVG
Ribosomal RNA-processing protein 40 G 256 Thermochaetoides Thermophila Dsm 1495 MSTTTRPFVLPGETIDPSLVPTHPKHPLRLGPGLRHVPPSDIIPTVAGQLITNLNKNSMWVEYNSQRYVPTQNDLVLAQVLRSTQDSYLCLITPHTPPATLPHLAFESATKKTRPQLQPGQLVYARVSLANRHMDPELECVNPSTGKADGLGPITGPGCVFEVSLGFARRLLMAKSREEGKVGVLEMLAGEDPSIGEAGAGLAFETAVGRNGRVWVGSEDVKTVIIVGRALQETDRGNLTIEGQRKLVRRLLREMR
Putative exosome complex protein H 358 Thermochaetoides Thermophila Dsm 1495 MPITIHAPLPPPRLHDEDSDVDMSSDSDSSSEGGVPLTSNLPSRAKPKSSLFTTTKSSSDIVTPGELITTSPQFMRGHGTYIPPGTTSIISSVAGTILRTNKLLSVRPLRARYTPEVGDLVVGRIIEVQARRWRVDVGSTQFASLPLSAINLPGGILRKRTETDELQMRSFFSEGDLLVAEVQGVYGDGGAVLHTRSLKYGKLRNGVFVAVSGMGGGGGVVRSRRQVWTLEGANGAGLIDVVLGVNGYVWIAKHTEDGPGEDPNASTKQVGITNLEEGMSANMYSSQNDRIEAETMREIARLRGVVMALVENGLRVDEDMVMRGYREAVEMALVSPEGPEDVYLGGERGRQLAAALTA
Putative exosome 3'->5 protein I 220 Thermochaetoides Thermophila Dsm 1495 MTTTQPTLALPGQLLGPISKYQPGPGTHVHESNLYSSLLGTVHVTQPARAPGPVKRLNRITPAPTPAELPTISVSAARPAGSAASGLVTGRKREILPEVGNIVLCRVIRITPRQAVVTILVCGDTVLDAEWQGLIRVQDIRATEKDRVKVYESFRPGDIVRAEVISLGDQANYYLSTARNELGVILATSEAGNTMYPVSWREYRDPITGLTELRKVAKPY
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-06-14
Deposition Author(s): Holdermann, I. , Lazzaretti, D. , Sprangers, R.