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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8P2G

Staphylococcus aureus 70s ribosome with elongation factor g locked with fusidic acid cyclopentane with a trna in pe/e chimeric state

PDB DOI: 10.2210/pdb8p2g/pdb

Classification: RIBOSOME
Organism(s): Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct

Deposited: 2023-05-16
Deposition Author(s): Gonzalez-Lopez, A. , Selmer, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.02 Å

8p2g
Literature

Staphylococcus aureus 70s ribosome with elongation factor g locked with fusidic acid cyclopentane with a trna in pe/e chimeric state

Gonzalez-Lopez, A. , Selmer, M.

Primary Citation of Related Structures: 8P2G


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
16S ribosomal RNA a 1555 NA UUUUAUGGAGAGUUUGAUCCUGGCUCAGGAUGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAGCGAACGGACGAGAAGCUUGCUUCUCUGAUGUUAGCGGCGGACGGGUGAGUAACACGUGGAUAACCUACCUAUAAGACUGGGAUAACUUCGGGAAACCGGAGCUAAUACCGGAUAAUAUUUUGAACCGCAUGGUUCAAAAGUGAAAGACGGUCUUGCUGUCACUUAUAGAUGGAUCCGCGCUGCAUUAGCUAGUUGGUAAGGUAACGGCUUACCAAGGCAACGAUGCAUAGCCGACCUGAGAGGGUGAUCGGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAUGGGCGAAAGCCUGACGGAGCAACGCCGCGUGAGUGAUGAAGGUCUUCGGAUCGUAAAACUCUGUUAUUAGGGAAGAACAUAUGUGUAAGUAACUGUGCACAUCUUGACGGUACCUAAUCAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGCGCGCGUAGGCGGUUUUUUAAGUCUGAUGUGAAAGCCCACGGCUCAACCGUGGAGGGUCAUUGGAAACUGGAAAACUUGAGUGCAGAAGAGGAAAGUGGAAUUCCAUGUGUAGCGGUGAAAUGCGCAGAGAUAUGGAGGAACACCAGUGGCGAAGGCGACUUUCUGGUCUGUAACUGACGCUGAUGUGCGAAAGCGUGGGGAUCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAAGUGUUAGGGGGUUUCCGCCCCUUAGUGCUGCAGCUAACGCAUUAAGCACUCCGCCUGGGGAGUACGACCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGACCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAAAUCUUGACAUCCUUUGACAACUCUAGAGAUAGAGCCUUCCCCUUCGGGGGACAAAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAAGCUUAGUUGCCAUCAUUAAGUUGGGCACUCUAAGUUGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAAUCAUCAUGCCCCUUAUGAUUUGGGCUACACACGUGCUACAAUGGACAAUACAAAGGGCAGCGAAACCGCGAGGUCAAGCAAAUCCCAUAAAGUUGUUCUCAGUUCGGAUUGUAGUCUGCAACUCGACUACAUGAAGCUGGAAUCGCUAGUAAUCGUAGAUCAGCAUGCUACGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGUCACACCACGAGAGUUUGUAACACCCGAAGCCGGUGGAGUAACCUUUUAGGAGCUAGCCGUCGAAGGUGGGACAAAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCUCCUUUCU
mRNA b 24 NA GGCAAGGAGGUAAAAAUGGCAAAA

Proteins
Molecule Chains Sequence Length Organism Sequence
30S ribosomal protein S12 M 137 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MPTINQLVRKPRQSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGVDGRRQGRSLYGTKKPKN
30S ribosomal protein S13 N 121 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDDELGRIREVVDGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKKK
30S ribosomal protein S14 type Z O 61 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MAKTSMVAKQQKKQKYAVREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKASW
30S ribosomal protein S15 P 89 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MAISQERKNEIIKEYRVHETDTGSPEVQIAVLTAEINAVNEHLRTHKKDHHSRRGLLKMVGRRRHLLNYLRSKDIQRYRELIKSLGIRR
30S ribosomal protein S16 Q 91 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
30S ribosomal protein S17 R 87 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MSERNDRKVYVGKVVSDKMDKTITVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEIVEESVII
30S ribosomal protein S18 S 80 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MAGGPRRGGRRRKKVCYFTANGITHIDYKDTELLKRFISERGKILPRRVTGTSAKYQRMLTTAIKRSRHMALLPYVKEEQ
30S ribosomal protein S19 T 92 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MARSIKKGPFVDEHLMKKVEAQEGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHVADDKKTRR
30S ribosomal protein S20 U 83 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
50S ribosomal protein L22 V 117 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MEAKAVARTIRIAPRKVRLVLDLIRGKNAAEAIAILKLTNKASSPVIEKVLMSALANAEHNYDMNTDELVVKEAYANEGPTLKRFRPRAQGRASAINKRTSHITIVVSDGKEEAKEA
50S ribosomal protein L23 W 91 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MEARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEEIFNVKVASVNIMNYKPKKKRMGRYQGYTNKRRKAIVTLKEGSIDLFN
50S ribosomal protein L24 X 105 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIKSNN
50S ribosomal protein L25 Y 217 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIENDSAESVVTVVAPTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE
50S ribosomal protein L27 Z 94 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MLKLNLQFFASKKGVSSTKNGRDSESKRLGAKRADGQFVTGGSILYRQRGTKIYPGENVGRGGDDTLFAKIDGVVKFERKGRDKKQVSVYAVAE
50S ribosomal protein L28 1 62 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
50S ribosomal protein L29 2 69 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIEQSKANQ
50S ribosomal protein L30 3 59 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MAKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVEEK
50S ribosomal protein L31 type B 4 84 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MKQGIHPEYHQVIFLDTTTNFKFLSGSTKTSSEMMEWEDGKEYPVIRLDISSDSHPFYTGRQKFAAADGRVERFNKKFGLKSNN
Large ribosomal subunit protein bL32 5 57 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MAVPKRRTSKTRKNKRRTHFKISVPGMTECPNCGEYKLSHRVCKNCGSYNGEEVAAK
Large ribosomal subunit protein bL33A 6 49 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MRVNVTLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTLHRETK
30S ribosomal protein S3 D 217 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MGQKINPIGLRVGIIRDWEAKWYAEKDFASLLHEDLKIRKFIDNELKEASVSHVEIERAANRINIAIHTGKPGMVIGKGGSEIEKLRNKLNALTDKKVHINVIEIKKVDLDARLVAENIARQLENRASFRRVQKQAITRAMKLGAKGIKTQVSGRLGGADIARAEQYSEGTVPLHTLRADIDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSGGGK
50S ribosomal protein L34 7 45 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA
50S ribosomal protein L35 8 66 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MPKMKTHRGAAKRVKRTASGQLKRSRAFTSHLFANKSTKQKRQLRKARLVSKSDMKRVKQLLAYKK
50S ribosomal protein L36 9 37 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MKVRPSVKPICEKCKVIKRKGKVMVICENPKHKQRQG
30S ribosomal protein S2 C 255 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVDEAYNFLKQVSEDGGQVLFVGTKKQAQESVKSEAERAGQFYINQRWLGGLLTNYKTISKRIKRISEIEKMEEDGLFEVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQALFVVDPRKERNAIAEARKLNIPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMADAILEGQQGVSNEEVAAEQNIDLDEKEKSEETEATEE
Elongation factor G E 693 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNKGE
30S ribosomal protein S5 F 166 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPRVEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELYN
50S ribosomal protein L2 G 277 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MAIKKYKPITNGRRNMTSLDFAEITKTTPEKSLLKPLPKKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADGEKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVLGKEGKYVLIRLRSGEVRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAPIGRPSPMSPWGKPTLGKKTRRGKKSSDKLIVRGRKKK
50S ribosomal protein L3 H 220 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MTKGILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKKGNK
50S ribosomal protein L4 I 207 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQGLNVLDITNADSLVITEAAAKKVEEVLG
50S ribosomal protein L5 J 179 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MNRLKEKFNTEVTENLMKKFNYSSVMEVPKIDKIVVNMGVGDAVQNSKVLDNAVEELELITGQKPLVTKAKKSIATFRLREGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFQGVSKKAFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTANTDEEARELLANFGMPFRK
50S ribosomal protein L6 K 178 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKEDRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEENITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK
30S ribosomal protein S11 L 129 Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRRV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-05-16
Deposition Author(s): Gonzalez-Lopez, A. , Selmer, M.