8P2F
Staphylococcus aureus 70s ribosome with elongation factor g locked with fusidic acid cyclopentane in post-translocational state
PDB DOI: 10.2210/pdb8p2f/pdb
Classification: RIBOSOME Organism(s): Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct
Deposited: 2023-05-16 Deposition Author(s): Gonzalez-Lopez, A. , Selmer, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.44 Å
Staphylococcus aureus 70s ribosome with elongation factor g locked with fusidic acid cyclopentane in post-translocational state
Gonzalez-Lopez, A. , Selmer, M.
Primary Citation of Related Structures: 8P2F
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L28 | 1 | 62 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV |
| 30S ribosomal protein S3 | D | 217 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MGQKINPIGLRVGIIRDWEAKWYAEKDFASLLHEDLKIRKFIDNELKEASVSHVEIERAANRINIAIHTGKPGMVIGKGGSEIEKLRNKLNALTDKKVHINVIEIKKVDLDARLVAENIARQLENRASFRRVQKQAITRAMKLGAKGIKTQVSGRLGGADIARAEQYSEGTVPLHTLRADIDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSGGGK |
| 30S ribosomal protein S5 | F | 166 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPRVEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELYN |
| 30S ribosomal protein S4 | E | 200 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRYLYGMTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGHILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEINNFVPEYLNFDADSLTGTFVRLPERSELPAEINEQLIVEYYSR |
| 30S ribosomal protein S6 | G | 98 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MRTYEVMYIVRPNIEEDAKKALVERFNGILATEGAEVLEAKDWGKRRLAYEINDFKDGFYNIVRVKSDNNKATDEFQRLAKISDDIIRYMVIREDEDK |
| 30S ribosomal protein S7 | H | 156 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MPRKGSVPKRDVLPDPIHNSKLVTKLINKIMLDGKRGTAQRILYSAFDLVEQRSGRDALEVFEEAINNIMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEDRLANEILDAANNTGGAVKKREDTHKMAEANKAFAHYRW |
| 30S ribosomal protein S8 | I | 132 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEGFIKNVEYVEDDKQGVLRLFLKYGQNDERVITGLKRISKPGLRVYAKASEMPKVLNGLGIALVSTSEGVITDKEARKRNVGGEIIAYVW |
| 30S ribosomal protein S9 | J | 132 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR |
| 30S ribosomal protein S10 | K | 102 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHKYKDSREQFEQRTHKRLIDIVNPTPKTVDALMGLNLPSGVDIEIKL |
| 30S ribosomal protein S12 | M | 137 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MPTINQLVRKPRQSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGVDGRRQGRSLYGTKKPKN |
| 50S ribosomal protein L29 | 2 | 69 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIEQSKANQ |
| 30S ribosomal protein S13 | N | 121 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDDELGRIREVVDGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKKK |
| 30S ribosomal protein S14 type Z | O | 61 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MAKTSMVAKQQKKQKYAVREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKASW |
| 30S ribosomal protein S15 | P | 89 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MAISQERKNEIIKEYRVHETDTGSPEVQIAVLTAEINAVNEHLRTHKKDHHSRRGLLKMVGRRRHLLNYLRSKDIQRYRELIKSLGIRR |
| 30S ribosomal protein S16 | Q | 91 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK |
| 30S ribosomal protein S17 | R | 87 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MSERNDRKVYVGKVVSDKMDKTITVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEIVEESVII |
| 30S ribosomal protein S18 | S | 80 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MAGGPRRGGRRRKKVCYFTANGITHIDYKDTELLKRFISERGKILPRRVTGTSAKYQRMLTTAIKRSRHMALLPYVKEEQ |
| 30S ribosomal protein S19 | T | 92 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MARSIKKGPFVDEHLMKKVEAQEGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHVADDKKTRR |
| 30S ribosomal protein S20 | U | 83 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK |
| 50S ribosomal protein L22 | V | 117 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MEAKAVARTIRIAPRKVRLVLDLIRGKNAAEAIAILKLTNKASSPVIEKVLMSALANAEHNYDMNTDELVVKEAYANEGPTLKRFRPRAQGRASAINKRTSHITIVVSDGKEEAKEA |
| 50S ribosomal protein L23 | W | 91 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MEARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEEIFNVKVASVNIMNYKPKKKRMGRYQGYTNKRRKAIVTLKEGSIDLFN |
| 50S ribosomal protein L30 | 3 | 59 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MAKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVEEK |
| 50S ribosomal protein L24 | X | 105 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIKSNN |
| 50S ribosomal protein L25 | Y | 217 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIENDSAESVVTVVAPTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE |
| 50S ribosomal protein L27 | Z | 94 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MLKLNLQFFASKKGVSSTKNGRDSESKRLGAKRADGQFVTGGSILYRQRGTKIYPGENVGRGGDDTLFAKIDGVVKFERKGRDKKQVSVYAVAE |
| 30S ribosomal protein S2 | C | 255 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVDEAYNFLKQVSEDGGQVLFVGTKKQAQESVKSEAERAGQFYINQRWLGGLLTNYKTISKRIKRISEIEKMEEDGLFEVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQALFVVDPRKERNAIAEARKLNIPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMADAILEGQQGVSNEEVAAEQNIDLDEKEKSEETEATEE |
| 50S ribosomal protein L31 type B | 4 | 84 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MKQGIHPEYHQVIFLDTTTNFKFLSGSTKTSSEMMEWEDGKEYPVIRLDISSDSHPFYTGRQKFAAADGRVERFNKKFGLKSNN |
| 30S ribosomal protein S11 | L | 129 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRRV |
| 50S ribosomal protein L32 | 5 | 57 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MAVPKRRTSKTRKNKRRTHFKISVPGMTECPNCGEYKLSHRVCKNCGSYNGEEVAAK |
| 50S ribosomal protein L33 1 | 6 | 49 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MRVNVTLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTLHRETK |
| 50S ribosomal protein L34 | 7 | 45 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA |
| 50S ribosomal protein L35 | 8 | 66 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MPKMKTHRGAAKRVKRTASGQLKRSRAFTSHLFANKSTKQKRQLRKARLVSKSDMKRVKQLLAYKK |
| 50S ribosomal protein L36 | 9 | 37 | Escherichia Coli , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MKVRPSVKPICEKCKVIKRKGKVMVICENPKHKQRQG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S ribosomal RNA | a | 1555 | NA | UUUUAUGGAGAGUUUGAUCCUGGCUCAGGAUGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAGCGAACGGACGAGAAGCUUGCUUCUCUGAUGUUAGCGGCGGACGGGUGAGUAACACGUGGAUAACCUACCUAUAAGACUGGGAUAACUUCGGGAAACCGGAGCUAAUACCGGAUAAUAUUUUGAACCGCAUGGUUCAAAAGUGAAAGACGGUCUUGCUGUCACUUAUAGAUGGAUCCGCGCUGCAUUAGCUAGUUGGUAAGGUAACGGCUUACCAAGGCAACGAUGCAUAGCCGACCUGAGAGGGUGAUCGGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAUGGGCGAAAGCCUGACGGAGCAACGCCGCGUGAGUGAUGAAGGUCUUCGGAUCGUAAAACUCUGUUAUUAGGGAAGAACAUAUGUGUAAGUAACUGUGCACAUCUUGACGGUACCUAAUCAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGCGCGCGUAGGCGGUUUUUUAAGUCUGAUGUGAAAGCCCACGGCUCAACCGUGGAGGGUCAUUGGAAACUGGAAAACUUGAGUGCAGAAGAGGAAAGUGGAAUUCCAUGUGUAGCGGUGAAAUGCGCAGAGAUAUGGAGGAACACCAGUGGCGAAGGCGACUUUCUGGUCUGUAACUGACGCUGAUGUGCGAAAGCGUGGGGAUCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAAGUGUUAGGGGGUUUCCGCCCCUUAGUGCUGCAGCUAACGCAUUAAGCACUCCGCCUGGGGAGUACGACCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGACCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAAAUCUUGACAUCCUUUGACAACUCUAGAGAUAGAGCCUUCCCCUUCGGGGGACAAAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAAGCUUAGUUGCCAUCAUUAAGUUGGGCACUCUAAGUUGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAAUCAUCAUGCCCCUUAUGAUUUGGGCUACACACGUGCUACAAUGGACAAUACAAAGGGCAGCGAAACCGCGAGGUCAAGCAAAUCCCAUAAAGUUGUUCUCAGUUCGGAUUGUAGUCUGCAACUCGACUACAUGAAGCUGGAAUCGCUAGUAAUCGUAGAUCAGCAUGCUACGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGUCACACCACGAGAGUUUGUAACACCCGAAGCCGGUGGAGUAACCUUUUAGGAGCUAGCCGUCGAAGGUGGGACAAAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCUCCUUUCU |
| mRNA | b | 24 | NA | GGCAAGGAGGUAAAAAUGGCAAAA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-05-16 Deposition Author(s): Gonzalez-Lopez, A. , Selmer, M.