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FASTA Sequence PDB Format mmCIF Format
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8P13

Cryo-em structure of rhodopsin-gi bound with antibody fragments scfv16 and fab79, conformation 1

PDB DOI: 10.2210/pdb8p13/pdb

Classification: SIGNALING PROTEIN
Organism(s): Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes

Deposited: 2023-05-11
Deposition Author(s): Marino, J. , Muehle, J. , Pamula, F. , Schertler, G.F.X. , Tejero, O. , Thoma, R. , Tsai, C.-J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 5.2 Å

8p13
Literature

Cryo-em structure of rhodopsin-gi bound with antibody fragments scfv16 and fab79, conformation 1

Marino, J. , Muehle, J. , Pamula, F. , Schertler, G.F.X. , Tejero, O. , Thoma, R. , Tsai, C.-J.

Primary Citation of Related Structures: 8P13


Proteins
Molecule Chains Sequence Length Organism Sequence
Rhodopsin R 348 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA
Guanine nucleotide-binding protein G(i) subunit alpha-1 A 376 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MKKHHHHHHHHHHENLYFQGGSMGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 B 340 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Guanine nucleotide-binding protein G(T) subunit gamma-T1 G 74 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKELKGGCVIS
single-chain Fv 16 S 259 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAAHHHHHHHH
Immunoglobin G heavy chain FAB fragment H 262 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MNFVLSLIFLALILKGVQCEVQLVESGGGLVKPGGSLKLSCAASGFTFSSYAMSWVRQTPEKRLEWVATISSRGLYTYFPDSMKGRFTISRDNAKNTLSLQMSSLRSEDTAMYYCLRGGGYDADYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIF
Immunoglobin G light chain L 239 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MMSPAQFLFLLVLWIRETNGDVVMTQTPLTLSVTIGQPASISCKSSQSLLDSDGETSLNWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKISRVEAADLGVYYCWQGTHFPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-05-11
Deposition Author(s): Marino, J. , Muehle, J. , Pamula, F. , Schertler, G.F.X. , Tejero, O. , Thoma, R. , Tsai, C.-J.