PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8P12

Cryo-em structure of rhodopsin-gi bound to antibody fragment fab13

PDB DOI: 10.2210/pdb8p12/pdb

Classification: SIGNALING PROTEIN
Organism(s): Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes

Deposited: 2023-05-11
Deposition Author(s): Marino, J. , Muehle, J. , Pamula, F. , Schertler, G.F.X. , Tejero, O. , Thoma, R. , Tsai, C.-J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.21 Å

8p12
Literature

Cryo-em structure of rhodopsin-gi bound to antibody fragment fab13

Marino, J. , Muehle, J. , Pamula, F. , Schertler, G.F.X. , Tejero, O. , Thoma, R. , Tsai, C.-J.

Primary Citation of Related Structures: 8P12


Proteins
Molecule Chains Sequence Length Organism Sequence
Rhodopsin R 348 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA
Guanine nucleotide-binding protein G(i) subunit alpha-1 A 376 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MKKHHHHHHHHHHENLYFQGGSMGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 B 340 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
Guanine nucleotide-binding protein G(T) subunit gamma-T1 G 74 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKELKGGCVIS
Immunoglobin G light chain L 238 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MKLPVRLLVLMFWIPASSSDVLMTQTPLSLPVSLGDQASISCRSSQIIVNRNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISGVEAEDLGVYYCFQGSHVPWTFGGGTQLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
Immunoglobin G heavy chain FAB fragment H 258 Parengyodontium Album , Salmonella Enterica , Enterobacter Aerogenes MAVLVLFLCLVAFPSCVLSQVQLKESGPGLVAPSQSLSITCTVSGFSLTNYGVHWVRQPPGKGLEWLGIIWAGGGTSYDSALMSRLSISKDNSKSQVFLKMNSLQSTDTAMYYCASENYSYDRGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIF
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-05-11
Deposition Author(s): Marino, J. , Muehle, J. , Pamula, F. , Schertler, G.F.X. , Tejero, O. , Thoma, R. , Tsai, C.-J.