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8P0B

Thogoto virus polymerase in mode b conformation and bound to 32-mer loop promoter rna

PDB DOI: 10.2210/pdb8p0b/pdb

Classification: VIRAL PROTEIN
Organism(s): Salmonella Typhimurium (Strain 14028S / Sgsc 2262) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-05-10
Deposition Author(s): Cusack, S. , Kouba, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.87 Å

8p0b
Literature

Thogoto virus polymerase in mode b conformation and bound to 32-mer loop promoter rna

Cusack, S. , Kouba, T.

Primary Citation of Related Structures: 8P0B


Proteins
Molecule Chains Sequence Length Organism Sequence
Polymerase acidic protein A 622 Salmonella Typhimurium (Strain 14028S / Sgsc 2262) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTDRPDHIDSRVWELSETQEDWITQVHGHVRRVVECWKYTICCLISNMHTHRGAPQYDVFKWQDRSTIEWICSKKKVQYPERDTPDLYDNERAVAYKVLLVSDLSDHSPTSGIYHDLAFNLEGEAEESCALVLRGSQLQDIKGFLCRALEWVVSNNLTQEVVETISGEAKLQFSVGTTFRTLLKRDTDWDVIPTPRVEPNVPRIEGRRWTQMKKLPLLKEKEGPPSPWRALLLGADSEYIVCPPGTDQEAISWIHSQSEIECIRESKSTPASVITCLTSSLQSFAEGNPVRSRIHEDIIAFGINKKQEKKQSASSSASGEWKRAEYQVEEMSLPPWVEEEMVLLRSDQEDNWIELEKNAIYTEVDGVAEGLVDKYIEIVGRTKVASVIEKWQIAATRTFSQLHTDRSRITACPIITRDPSGNCQFWGMVLLGPHHVKRDTDNAPLLIAEIMGEDTEEKYPKHSVFSLKVEGKQFLLSLKITSFSRNKLYTFSNIRRVLIQPASIYSQVVLSRAAENNSLNLEVNPEIQLYLEGAQRGMTLYQWVRMILCLEFLMAIYNNPQMEGFLANMRRLHMSRHAMMERRQVFLPFGSRPEDKVNECIINNPIVAYLAKGWNSMPNVYY
RNA-directed RNA polymerase catalytic subunit B 710 Salmonella Typhimurium (Strain 14028S / Sgsc 2262) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MNLFTPRSEINPTTTQELLYAYTGPAPVAYGTRTRAVLENIIRPYQYFYKEPNVQRALDIKTGCKEPEDINVEGPSSGFHTASVLKLADNFFRKYRPAMEKLKYWILVKLPKLKYAELSKGRQTYSFIHKRNLPAPIALEETVEFLEQNLRRKIGPTLLSYCQAIADVMELDETTYEGARDPRPWDIQLEEIDSDEEDPLFRQVGREETYTIKFSREELWDQMRTLNTMWKHLERGRLNRRTIATPSMLIRGFVKIVEDAAKEILENVPTSGVPVGGEEKLAKLASKQTFHTAVTGELSGDQEKFNECLDPDAMRLMWTVFLRKLGCPDWIMELFNIPFMVFKSKLADMGEGLVYTKGKLTDRKPLGEMPSEFDDLVRNVVGNSISCRLGMFMGMYNLTSTLLALISIEREELTGSHVESSDDFIHFFNCKTHEEMFKQAETLRLTLKLVGINMSPSKCILISPAGIGEFNSKFHHRDFVGNVATELPALVPNGTNPMTDLAMGLNVIKHSVNTGQMNLCTGALAMRIFNHAYKYAYMALGVTRRTRFMEENAITPLLTNQGASPVHSFSTMHLDEVALRRHLGLLDEETLRRILNPNNPVTQKGDPSMFFRIENKMPQIMEDYSVPSCFKYTLSRNRTIQDKPHKALLNKEERYQRVTSIINKLFPEVLIQEASAPGTVRESLKRRLELVVERSDLDEERKKRILSRIF
Polymerase basic protein 2 C 769 Salmonella Typhimurium (Strain 14028S / Sgsc 2262) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MDREEPAESECTLRALVEEYNGACKEAPKEMSKQFTDYNTFKRYTTSKKDHAPQMRLVYSVRKPWPISMTPSKEIPLVFNGTKLKDTILDLGESKRTRANIVVPDYWSKYGSQTSLEVVNAILYAEDLKVQRFFSTEWGEIRYGRMLPFRKPVQACPTIEEVNPASIPHTLLQVFCPQYTTLDSKRKAHMGAVEKLKRVMEPICKVQTQESAVHIARSLIDSNKKWLPTVVDHTPRTAEMAHFLCSKYHYVHTNTQDLSDTRSIDNLCGELVKRSLKCRCPKETLVANLDKITIQGRPMREVLADHDGELPYLGICRVAMGLSTHHTMKIRSTKFSILNSDHPRIEVKKVFSLSPDVQVTIPYRRFKGKAKVYFQNDQIQGYFSCTDRQIDEIKISAPKNAPLLEPLLDICYYGSFIEPGFEQTFGFYPAGKREFVDSFFMHHSKDHKAFLIHMGLDKDLSLPLSPELNWKEPALSKVCRVTELDSTVQPYTSATREFVLGETLNVYTQHENGLELLICPTEIRSTRGPLPPGTNLSGSEFIDIYQDPFSRAKSLLKSTILHAERCKEFVGNMLEEYQDPAETTVQSLVPINTWGKSAKRKLQEEITSDPDWHQCPRKRAKMSYLAIIAGSIQDRDKKQTNVPRAFMLRGSQIEYDMKATRGLVVDTTNRIIVGGETVLREGKGGPEGYVQTGVFEEQPRCYLVDTPDHGLSMGLSRFCVHSQGRYFQYEKKISIWEETDNIKATIDSQRDLKRRRDIEEMVSKRARIV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
3'RNA r 32 NA AGAGAAAUCAAGGCCCCCGGCCUGUUUUUGCU
3'RNA v 32 NA AGAGAAAUCAAGGCCCCCGGCCUGUUUUUGCU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-05-10
Deposition Author(s): Cusack, S. , Kouba, T.