8OZD
Cryoem structure of sparta complex dimer-3
PDB DOI: 10.2210/pdb8ozd/pdb
Classification: DNA BINDING PROTEIN Organism(s): Maribacter Polysiphoniae , Synthetic Construct
Deposited: 2023-05-09 Deposition Author(s): Ekundayo, B. , Lu, X.H. , Ni, D.C. , Stahlberg, H.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.89 Å
Cryoem structure of sparta complex dimer-3
Ekundayo, B. , Lu, X.H. , Ni, D.C. , Stahlberg, H.
Primary Citation of Related Structures: 8OZD
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| TIR domain-containing protein | A | 452 | Maribacter Polysiphoniae , Synthetic Construct | MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE |
| TIR domain-containing protein | C | 452 | Maribacter Polysiphoniae , Synthetic Construct | MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE |
| Piwi domain-containing protein | B | 507 | Maribacter Polysiphoniae , Synthetic Construct | MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI |
| Piwi domain-containing protein | D | 507 | Maribacter Polysiphoniae , Synthetic Construct | MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-05-09 Deposition Author(s): Ekundayo, B. , Lu, X.H. , Ni, D.C. , Stahlberg, H.