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FASTA Sequence PDB Format mmCIF Format
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8OZ6

Cryoem structure of sparta complex ligand-free

PDB DOI: 10.2210/pdb8oz6/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Maribacter Polysiphoniae , Synthetic Construct

Deposited: 2023-05-08
Deposition Author(s): Babatunde, E. , Dong, C.N. , Henning, S. , Xu, H.L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.97 Å

8oz6
Literature

Cryoem structure of sparta complex ligand-free

Babatunde, E. , Dong, C.N. , Henning, S. , Xu, H.L.

Primary Citation of Related Structures: 8OZ6


Proteins
Molecule Chains Sequence Length Organism Sequence
TIR domain-containing protein A 452 Maribacter Polysiphoniae , Synthetic Construct MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE
TIR domain-containing protein C 452 Maribacter Polysiphoniae , Synthetic Construct MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE
TIR domain-containing protein E 452 Maribacter Polysiphoniae , Synthetic Construct MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE
TIR domain-containing protein G 452 Maribacter Polysiphoniae , Synthetic Construct MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE
Piwi domain-containing protein B 507 Maribacter Polysiphoniae , Synthetic Construct MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI
Piwi domain-containing protein D 507 Maribacter Polysiphoniae , Synthetic Construct MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI
Piwi domain-containing protein F 507 Maribacter Polysiphoniae , Synthetic Construct MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI
Piwi domain-containing protein H 507 Maribacter Polysiphoniae , Synthetic Construct MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') i 18 NA UUUUUUUUUUUUUUUUUU
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') k 18 NA UUUUUUUUUUUUUUUUUU
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') m 18 NA UUUUUUUUUUUUUUUUUU
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') n 18 NA UUUUUUUUUUUUUUUUUU
DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') j 16 NA AAAAAAAAAAAAAAAA
DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') l 16 NA AAAAAAAAAAAAAAAA
DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') o 16 NA AAAAAAAAAAAAAAAA
DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') p 16 NA AAAAAAAAAAAAAAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-05-08
Deposition Author(s): Babatunde, E. , Dong, C.N. , Henning, S. , Xu, H.L.