8OPL
Virus-like particle based on pvy coat protein with t43c and d136c mutation with helical architecture encapsidating ssrna
PDB DOI: 10.2210/pdb8opl/pdb
Classification: VIRUS LIKE PARTICLE Organism(s): Potato Virus Y Strain Ntn
Deposited: 2023-04-07 Deposition Author(s): Kavcic, L. , Kezar, A. , Podobnik, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.41 Å
Virus-like particle based on pvy coat protein with t43c and d136c mutation with helical architecture encapsidating ssrna
Kavcic, L. , Kezar, A. , Podobnik, M.
Primary Citation of Related Structures: 8OPL
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Genome polyprotein (Fragment) | AA | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AB | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AC | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AD | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AE | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AF | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AG | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AH | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AI | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AS | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AT | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AU | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AV | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AW | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AX | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AY | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | AZ | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | BA | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | BK | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | BL | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | BM | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | BN | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | BO | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | BP | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | BQ | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | BR | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Genome polyprotein (Fragment) | BS | 267 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHCVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMCGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | aj | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | ak | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | al | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | am | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | an | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | ao | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | ap | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | aq | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | ar | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bb | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bc | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bd | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | be | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bf | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bg | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bh | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bi | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bj | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bt | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bu | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bv | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bw | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bx | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | by | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bz | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | ca | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | cb | 5 | NA | UUUUU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-04-07 Deposition Author(s): Kavcic, L. , Kezar, A. , Podobnik, M.