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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8ONZ

Chaetomium thermophilum methionine aminopeptidase 2 at the 80s ribosome

PDB DOI: 10.2210/pdb8onz/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Thermochaetoides Thermophila Dsm 1495

Deposited: 2023-04-04
Deposition Author(s): Kisonaite, M. , Klein, M.A. , Sinning, I. , Wild, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.94 Å

8onz
Literature

Chaetomium thermophilum methionine aminopeptidase 2 at the 80s ribosome

Kisonaite, M. , Klein, M.A. , Sinning, I. , Wild, K.

Primary Citation of Related Structures: 8ONZ


Proteins
Molecule Chains Sequence Length Organism Sequence
Ribosomal protein L19 LR 2898 Thermochaetoides Thermophila Dsm 1495 MSEPVANDAAPGSFDLEQARTALTSSSTTVRIAQLRAIDEKISHNSLDRPALLGLLKVLFWTHTFYADRPSRRAVQKCLTSITKCSEAESFVPPLVAAIRQEAQKQAIAQANSFALVEWCSLLIQNLAGTSLWEKCSKDLVLATADALEKSLQPTARGSVGHSALVITRRGFRKLVQADQAAVSTAIGVLAAKDAKPTAKNSVLLGVIAGVCARQPEAKAVVEDLKGQYFTFYAREIIGSRTALPSHIADGLHDFFAAFVSLEDLDKEVFPAIEKGLLRAPEVVLNDLITPLVKALPKLDLSKALNSRFVKPLLSNIKSSNAVIRSGAVRAFREIATVCRDFADLEKTADEVLGPLKTNKLASADHRVLHSEMLSGLPLSASIATKIATGLPAVTSKEANEAALSAETLALNASALFLLRTPEVPKALLDAYVKGLGDKKVSSRRIWILRTGDLLQAFAQEAELPAGFVAFAEAVVPSLLTIFNEVVANPTAAVQSGLVTGALVVAGLSGLLQRLENANIQALLKKAAVQKNSLILDPKPSFVLSQRLYSKYPEDDLKWFCRALSAIVEGLLSSSDAIKLAWTQAFIFLICSATTPSAVRRQAIDALSDLSARSLKPGCQFVATEIIKGLWHWIATSEAAEKESAAVLAKSGTSNLHLVLKAICLSPAELNRRSGGDVDKAQLQAQMCSLLVLAKQQLIPRASWIDLCLKVQVDPGQLAKDHEDALIDEIVRCTGHEQKSEATKQAAYSAAAELVFVSPENMTSRIVALIQDDLDAAVVSTVGPLEAAIFRTPEGTTFVDVLAKRQNVVPNKNVKDYDLLKWEEELRQQLAEKKGIQKKLTAEEQAKVSAQLKKEAEIRENVRKIAAKLLRGFGVVKALATGPPTDATRWMGAAVSSTLAAINAGATRITGETGPLAFVSLSEQITSRIGSFIRPFMGVATLRAYEVTALPENLTEEPFEELITRVLYRLRFVGEQRPLDTVSLIYVLPLVLYVLEKGGFAKDADEKDAQLVLAIEILSFHTDVAFDEALPRAEILSSLISSMQKYSQHYKILKDCFSDMVRCIAPNISPAEIGVLARGAIVPQTSVRTAVLQAISADVDMSDVNASEEIWLACHDDIDENAELGREIWEESEWKTSEELGHKMIPYLESKDVQLRRAAAKSLAEVAGQHPDVVAPILEKLRESYVELAKPRVQQLDEFGMPKKMDLSDPWEARHGIALAFKGLAPHLEKRQLEPYFNFLIEQGPLGDQSAGVRAEMLEAANMTIEIHGKEILDRLMKTFEKVLEAPDKNSEAADRVNEAVIIMYGALARHLKPGDKKIPVVIERLLATLSTPSEAVQYAIAECLPPLVRTCADKSSKYFDEMMEILLTSKKYSEQRGAAYGLAGLVLGRGINVLKEYRIMTQLNSALENKKEIRQRESAMIAYELLSTILGRLFEPYVIQIVPQLLAGFGDGNADVREAALAAAKACFAKLSSYGVKQILPTLLNGLDDDQWRSKKGACDLLGAMAYLDPQQLAQNLPEIIPPLTAVLNDSHKEVRAAANRSLKRFGEVITNPEIKSLIDILLKALSDPTKYTDDALDALIKVQFVHYLDAPSLALVSRILQRGLGDRSNTKRKASQVIGSLAHLTERKDLIAHLPVLVAGLKVAVVDPVPTTRATASRALGSLVEKLGEDALPDLIPNLMQTLKSDTSAGDRLGSAQALSEVLAGLGTSRLEETLPTILQNVESPKPAVREGFMSLFIFLPVCFGNSFANYLGKIIPPILSGLADDVESIRETALRAGRLLVKNFAVRAVDLLLPELERGLADDNYRIRLSSVELVGDLLFNLAGVKASANKEEDEADQDITKEAGASLREVLGEEKRNKILSALYVCRCDTAGAVRAAAVTVWKQLVHSPRTLKELVPTLTQLLIKRLGSSNMEHKVIASNALGELIKKAGDGVLATLLPTLEEGLQTSRDVNAKQGICLALKELISSASPEALEDHEKTLISVVRTALTDSDSDVREAAAEAFDSLQQIIGKRAIDQVLPFLLNLLRSEEEANNALAALLTLLTEPTRANIILPNLIPTLITPPISAFNAKALASLSKVAGAAMNRRLPNIINSLMDNIVGCADETLREELDTSFDTVILSIDDTDGLNVVMNVLLQLIKHEDHRKRAATGRHLAKFFSAATVNYSRYNQDIIRALLISFDDKDMEVVKASWNALNEFTKRLKKEEMEGLVISTRQTLLQVGVAGRELAGFELPKGINAILPIFLQGLMNGTAEQRVAAALGISDIVDRTTEASLKPFVTQITGPLIRVVSERSTEVRSAILLTLNHLLEKMPTALKPFLPQLQRTFAKSLADTSSEILRSRAARALGTLIKYTPRVDPLIAELVTGSKTTDAGVKTAMLKALYEVISKAGSNMGESSRAAVLGLIDMEPDENDKAMTITNAKLFGALMKNVPADMAVGLLKNRVMVREFTTSSVLALNAVLLESPSSLLDSPLAEDLPELLCQGIESKDAFIADNFIMATGKYLLHDSPKAFETTKAIFTSLAKLIPPGNPGDSRRLSLVLVRTMARKQPDMVRPHLSLLAPPIFSSVRDMVIPVKLAAEAAFVQLFAVADEESKVFDKWITAATDLAPNVKRSMQDYFKRVTLRLGAQARERREAEGGAGTLGLSADEVEDEKELMAVGKPRVSWNRNPEKLKKPRAQSEVDPGPVPLKTVARARQKSFKMVNLRTQKRLAASVLGCGEGKVWLDPNEVSEISNANSRQSIRKLVADGLIIKKPVTMHSRSRARELNLARRIGRHRGFGKRKGTADARMPQQVLWMRRQRVLRRLLVKYRASGKIDKHLYHELYHLAKGNTFKHKRALVEHIHRAKAEKARERQIKEEMDAKRARTKAARERKQERQAAKRNALLGEEEESK
60S ribosomal protein L25-like protein LX 156 Thermochaetoides Thermophila Dsm 1495 MAPKDVKKGGASKAAKGAQAKKAAQAALKGVHSHKKTKVRKSTTFHRPKTLVLSRAPKYPRKSIPHEPRLDEHKIIIHPLNTEGALKKIEEQNTLVFIVDVKANKAQIKQALKKLYDIDTVKINTLIRPDGTKKAFARLTPDVDALDIAATKLGLV
60S ribosomal protein L26-like protein LY 138 Thermochaetoides Thermophila Dsm 1495 MKVRPTVSSSRRKARKAHFSAPSSVRRVIMSAPLSKELREKYNVRSIPIRKGDEVQIVRGAHKDKEGKVTSVYRLKYVIHVERVTREKATGQTVPIGIHPSNVVITKLHLDKDRENILARIKAGREQVAKAKGKKTAA
dolichyl-diphosphooligosaccharide--protein glycotransferase LH 935 Thermochaetoides Thermophila Dsm 1495 MSSNGKVKAGQLWSKNKEELTKILGELKTELSQLRIQKISSSGAKLNKIHDLRKSIARVLTVINAKQRAQLRLFYKNKKYLPLDLRPKLTRALRRRLSKEDASRVLEKTKKRLTHFPQRKYAVKAATYSEGPALSIYHSHQREARCSLVQCCTFEPELRESLLLLPVAASLKGPNFTRRERQHRNPSEATMSAAEPLKLLASAGKGKSTRSVLRVAILVLIAGAAVASRLFSVIRFESIIHEFDPWFNFRATKYLVANGFYKFWDWFDDRTWHPLGRVTGGTLYPGLMVTSGVIYHLLRFLTVPVDIRNICVLLAPGFSGLTAIAAYLLTNEMTTSPSAGLLAAAFMGIAPGYISRSVAGSYDNEAIAIFLLVFTFFLWIKALKQGSMLWGALCALFYGYMVASWGGYAFITCLLPLHSFVLICMGRYSTRLYVAYTTWYALGTLASMQIPFVGFLPVKTSEHMPALGIFGFLQLLAFLDYVRSTISSRQFQTFLWLFAGGIFGLGLLGLVIATSAGLIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTAWPAFFFDLNMLVWLFPVGVYLCFQQLGDEHVFIIVYALFGSYFAGVMVRLMLTLTPVVCVAAAIAFSSLLDTYLNLKTPNPGQAQATEDAGKKKSGLKAASKPAVGVYALWGKTMMISGLTIYLLLFVLHCTWVTSNAYSSPSVVLASRLPDGSQHIIDDYREAYQWLRQNTREDAKIMSWWDYGYQIGGMADRPTLVDNNTWNNTHIATVGKAMASREEVSYPIMRQHEVDYVLVVFGGLLGYSGDDINKFLWMVRIAEGIWPDEVSERAFFTPRGEYRVDAEATDTMKNSLMYKMCYYNYNNLFPPGQAVDRMRGVRLPEVGPTLNTLEEAFTSENWIIRIYKVKDLDNLGRDHASAAAFERGHKKKKATKKRGPRVLRVE
60S ribosomal protein L38-like protein LK 94 Thermochaetoides Thermophila Dsm 1495 MPQEVSDIKKFIEICRRKDASSKILTIAFPPPLTAARIKKNPKTQQIKFKVRCQRFLYTLVLKDSDKAEKLKQSLPPNLQIKDVPKRNKRKSSA
Methionine aminopeptidase 2 A 444 Thermochaetoides Thermophila Dsm 1495 MAAQVPTEELSKLSVQDAAAVKPGADAPEPANGKENESDDEEDEAEEAAAAPESGAGGAKKKKKKKNKKKKKKPTQQSDPPRVLISHLFPDGKYPAGEEVEYVNENRYRTTSEEKRYLDNMQSEFLNDYRQAAEVHRQVRKWAQGFVKPGKSLIEISEGIEDSVRALVGHPGLEEGDALKAGMGFPVGLSINHCAAHYNPNSGNKIVLQQDDVIKIDIGVHVNGRIVDSAFTMAWNDQFNPLLEAVRAATNAGIREAGIDARVGEIGGVIQEVMESYEVEINGKTYPVKPIRNLNGHNILPYSIHGTKSVPIVKTHDQTKMEEGDVFAIETFGSTGKGYVIESGEVSHYALRGDAPKVDLRLSSAKSLLNVIKRHFGTLPFCRRFLDRLGQEKYLLGLNNLVSNGIVEDYPPLVDEKGSYTAQFEHTILIRPTVKEVISRGDDY

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
28S rRNA 1 3337 NA AGGUUGACCUCGGAUCAGGUAGGAGGACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGAAAAGAAACCAACAGGGAUUGCCCUAGUAACGGCGAGUGAAGCGGCAACAGCUCAAAUUUGAAAGCUGGCUUCGGCCCGCGUUGUAAUUUGGAGAGGAUGCUUUGGGCGAGGCUCCUUCUGAGUUCCCUGGAACGGGACGCCACAGAGGGUGAGAGCCCCGUAUAGUUGGAAGCCAAGCCUGUGUAAAGCUCCUUCGACGAGUCGAGUAGUUUGGGAAUGCUGCUCAAAAUGGGAGGUAAAUUUCUUCUAAAGCUAAAUACCGGCCAGAGACCGAUAGCGCACAAGUAGAGUGAUCGAAAGAUGAAAAGCACUUUGAAAAGAGGGUUAAAUAGCACGUGAAAUUGUUGAAAGGGAAGCGCUUGUGACCAGACUUGCGCCCGGCGGAUCAUCCGGUGUUCUCACCGGUGCACUCCGCCGGGCUCAGGCCAGCAUCGGUUCUGGCGGGGGGAUAAAGGCCCAGGGAAUGUGGCUCCUCCGGGAGUGUUAUAGCCCUGGGUGUAAUACCCUCGCCGGGACCGAGGACCGCGCUCUGCAAGGAUGCUGGCGUAAUGGUCACCAGCGACCCGUCUUGAAACACGGACCAAGGAGUCAAGGUUUUGCGCGAGUGUUUGGGUGUAAAACCCGCACGCGUAAUGAAAGUGAACGUAGGUGAGAGCUUCGGCGCAUCAUCGACCGAUCCUGAUGUAUUCGGAUGGAUUUGAGUAGGAGCGUUAAGCCUUGGACCCGAAAGAUGGUGAACUAUGCUUGGAUAGGGUGAAGCCAGAGGAAACUCUGGUGGAGGCUCGCAGCGGUUCUGACGUGCAAAUCGAUCGUCAAAUCUGAGCAUGGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUACCGCCGAAGUUUCCCUCAGGAUAGCAGUGUCGACCUUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGGGACUCGGGGGCGAUUUUUAGCCUUCAUCCAUUCUCAAACUUUAAAUAUGUAAGAAGCCCUUGUUACUUAACUGAACGUGGGCAUUCGAAUGUAUCGACACUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGAACGCGGGGUUAAGGUGCCGGAGUGGACGCUCAUCAGACACCACAAAAGGCGUUAGUACAUCUUGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGACUGUGUAACAACUCACCUGCCGAAUGUACUAGCCCUGAAAAUGGAUGGCGCUCAAGCGUCCCACCCAUACCCCGCCCUCAGGGUAGAAACGAUGCCCUGAGGAGUAGGCGGCCGUGGAGGUCAGUGACGAAGCCUAGGGCGUGAGCCCGGGUCGAACGGCCUCUAGUGCAGAUCUUGGUGGUAGUAGCAAAUACUUCAAUGAGAACUUGAAGGACCGAAGUGGGGAAAGGUUCCAUGUGAACAGCGGUUGGACAUGGGUUAGUCGAUCCUAAGCCAUAGGGAAGUUCCGUUUCAAAGGGGCACUCGUGCCCCGUGUGGCGAAAGGGAAGCCGGUUAAUAUUCCGGCACCUGGAUGUGGGUUUUGCGCGGCAACGCAACUGAACGCGGAGACGACGGCGGGGGCCCCGGGCAGAGUUCUCUUUUCUUCUUAACGGUCUAUCACCCUGGAAACAGUUUGUCUGGAGAUAGGGUUUAAUGGCCGGAAGAGCCCGACACUUCUGUCGGGUCCGGUGCGCUCUCGACGUCCCUUGAAAAUCCGCGGGAGGGAAUAAUUCUCACGCCAGGUCGUACUCAUAACCGCAGCAGGUCCCCAAGGUGAACAGCCUCUGGUUGAUAGAACAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAACUUCGGGAAAAGGAUUGGCUCUAAGGGUUGGGCACGUUGGGCUUUGGGCGGACGCCCUGGGAGCAGAGGGCCUCUAGCCGGGCAACCGGCCGGCGGCCCUCAGCACCCGGGGUUGAAGCCCUUAGCAGGCUUCGGCCGUCCGGCGUGCGGUUAACAACCAACUUAGAACUGGUACGGACAGGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGCCAGAAAGUGGUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAAAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAAAGACAUAGGAGGUGUAGAAUAGGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACUCCUAUUGUUUUUUUACUUAUUCAAUGAAGCGGGGCUGGACUUGCGUCCAACUUCUGGAGUUAAGGUCCUUCGCGGGCCGACCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACCAUAACGCAGGUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGGUAAAAGUCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUCGAUCCUUUAGUCCCUCGAAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAACUCGUCGCAAUGGUAAUUCAGCUUAGUACGAGAGGAACCGCUGAUUCAGAUAAUUGGUUUUUGCGGUUGUCCGACCGGGCAGUGCCGCGAAGCUACCAUCUGCUGGAUAAUGGCUGAACGCCUCUAAGUCAGAAUCCAUGCCAGAACGCGACGAUACUACCCGCACGUUGUAGACGUAUAAGAAUAGGCUCCGGCCUCGUAUCCUAGCAGGCGAUUCCUCCGCCGGCCUCGAAGUGGCCGUCGGUAAUUCGCGUAUUGCAAUUUAGACACGCGCGGGAUCAAAUCCUUUGCAGACGACUUAGAUGUGCGAAAGGGUCCUGUAAGCAGUAGAGUAGCCUUGUUGUUACGAUCUGCUGAGGGUAAGCCCUCCUUCGCCUAGAUUU
5.8S rRNA 2 156 NA AAACUUUCAACAACGGAUCUCUUGGUUCUGGCAUCGAUGAAGAACGCAGCGAAAUGCGAUAAGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCGCCGGUAUUCCGGCGGGCAUGCCUGUUCGAGCGUCAU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-04-04
Deposition Author(s): Kisonaite, M. , Klein, M.A. , Sinning, I. , Wild, K.