8OKI
Cryo-em structure of pyrococcus furiosus transcription elongation complex bound to spt4/5
PDB DOI: 10.2210/pdb8oki/pdb
Classification: TRANSCRIPTION Organism(s): Pyrococcus Furiosus Dsm 3638 , Synthetic Construct
Deposited: 2023-03-28 Deposition Author(s): Engel, C. , Grohmann, D. , Hausner, W. , Heiss, F.B. , Pilsl, M. , Reichelt, R. , Tarau, D.M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.45 Å
Cryo-em structure of pyrococcus furiosus transcription elongation complex bound to spt4/5
Engel, C. , Grohmann, D. , Hausner, W. , Heiss, F.B. , Pilsl, M. , Reichelt, R. , Tarau, D.M.
Primary Citation of Related Structures: 8OKI
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA-directed RNA polymerase subunit Rpo1N | A | 910 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MQSMKKVIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGGRAGECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKKIELARNRRSEFNEIIKEIHKKAKERMVCPHCGAPQYPIKFEKPTIYWEIRKDEQGNEYRHRLMPTEVRDWLEKIPDKDLPLLGLDPEKSRPEWMVLTVLPVPPVTARPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPGANYVIDPEGRRRRIMDSNKETLANQLDIGWTVERHLMDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGGPIIGGIQDHISGGYLLTREGAYFTRDEVEQMLMFAGVDITELPEPDKYDENGNPLWSGKTIFSLLLPEDLTVWYRNKLCDEPERCEALEKLIEEKLMPDPEEVRKLAYDGFVYIQNGKLLSGAIDKKAYGREDGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPEEARDRIREIIREAEERVNKLIEAYKRGELEPLPGKSLEDTLESLIMAVLAEARDNAGAVAEKYLGMDNHTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGFRGRVLSHFKPGDLGARAKGFVVNSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRSPEGIIVQFKYGEDGVDPMKSWRGKTVDVDRIIVRTLLKMRGNNKAKV |
| DNA-directed RNA polymerase subunit Rpo10 | N | 65 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIMHYRVY |
| DNA-directed RNA polymerase subunit Rpo12 | P | 49 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MVEAVYRCFKCGREVKLDLSITRDLRCPYCGSKILYKPRPKVPRRVKAI |
| DNA-directed RNA polymerase subunit Rpo7 | E | 189 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MYKIVTVKDVVRIPPTMFTMDPKEAAKIILRETYEGTYDKDEGVILSILEVKDIKDGIIIPGDGATYHEVVFDVLVWEPKIHEVVEGYVADVMPFGAFIRIGPIDGLVHISQLMDDYVVYDERNKQFVGKEKKYLLKIGDLVRARIINISAKSKVIRENRIGLTMRQPGLGKFEWIEKEKKKEKEEGKK |
| DNA-directed RNA polymerase subunit Rpo4 | F | 120 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MIGRGKLGEKYITIAEAKELLLKRREEEVKAGIEEPLYYEARLALEHAERFAKLPADKAKEAVEELMNAFEWMSDRIACKIVDIMPEDSMDLRVIFAKEEYQPTQEEMKQILDILDKYRE |
| DNA-directed RNA polymerase subunit beta | B | 1117 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MRGPTVVDVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYAAPLYLEMIPVIKGVEQDPVEVRIGELPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKVFSYRHGYRALVAVERRKDGILYVDIPNVPKPVKFVYVMRALGLERDKDIVEAVGNDPEVQQIMFDNLEDASDITTQQEALEFIGKLVAPGQAREYRLKRAEYVIDNNLLPHMGVSPEDRIKKAYYLGMMALKVIELSLGRRPEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRKGDKYTFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYMSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEIREYLMSLGIVPIEVRRPDPTLWRVYLNGVLIGTIEDGKALVQRIRQDRRSGKISDVINVAYYEDVKEVYVNSDDGRVRRPLIIVENGVPKLTKEHVQAVKEGRLKWSDLIKMGIIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPDPTVRGYRGEKYYRNLDEDGLIFPESKVEGKDVLVGRTSPPRFLEERGLGTVSLQERRETSVAVRPSEKGVVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRLEADIFIGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRRRVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLSERV |
| DNA-directed RNA polymerase subunit Rpo1C | C | 397 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MVSLSTIKSLIEKKGANLPENVKSELYEKLKKYNEKYKLTKAEIEAIIDDVVKEYERALVEPGEPVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNPSTPMMTVYLDEEHRYDRAKAEEVARRIEGTTLENLARSTTLDLINFEFIVEIDPERLERSGLTMEKVVKKLESSFKSAEFEVDGYTLIVRPKKADKISDLRRFAEKIKKHRLKGLSGVGKTIVRKEGDEYVIYTEGSNFKQVLKVPGVDPTRTRTNNIHEIAEVLGIEAARNAIIDEIVSTMQEQGLEVDIRHIMLVADMMTLDGIVRPIGRHGVVGEKSSVLARAAFEITVQHLFEAAEKGEVDNLNGVIENVLIGQPVPVGTGMVKLTMKLPLRPQKEKEEV |
| DNA-directed RNA polymerase subunit Rpo3 | D | 275 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MAGIEVQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRLAMIPLTTPVDRFELDALELDDYTVTLSLEAEGPGIVYSGDLKSDDPDVKPVNPNIPIVKLAEGQRLVFNAYAKLGRGKDHAKWQPGFVYYKYYTIVHISKSIPEWKELKKLAKKRGLPVEETEEEVLVTTIKPFYIPKDFEEYEGKEIWEEIVPNTYIFTVETNGELPVEEIVSIALKILMRKADRFISELQKLTSWSHPQFEKHHHHHH |
| Transcription elongation factor Spt5 | G | 152 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MAGKIFAVRVTHGQEETTAKLIYSKVRTYNLPIYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHARGVLPGEVPFKEIEHFLEEKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISKLQKEE |
| DNA-directed RNA polymerase subunit Rpo5 | H | 82 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MAGKKEFSIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLPQIKASDPAVKALGAKPGDVIEIKRKSPTAGVYYYYRVVVED |
| Transcription elongation factor Spt4 | I | 61 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MSEKACRHCHYITSEDRCPVCGSRDLSEEWFDLVIIVDVENSEIAKKIGAKVPGKYAIRVR |
| DNA-directed RNA polymerase subunit Rpo6 | K | 57 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MFKYTRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIRPS |
| DNA-directed RNA polymerase subunit Rpo11 | L | 95 | Pyrococcus Furiosus Dsm 3638 , Synthetic Construct | MKIEVIKKEENLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEALEEAAKKIFERAKEVLEAWEKAVKS |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-03-28 Deposition Author(s): Engel, C. , Grohmann, D. , Hausner, W. , Heiss, F.B. , Pilsl, M. , Reichelt, R. , Tarau, D.M.