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8KDA

Cryo-em structure of hydrogenobacter thermophilus minimal protein-only rnase p (harp) in complex with pre-trnas

PDB DOI: 10.2210/pdb8kda/pdb

Classification: HYDROLASE/RNA
Organism(s): Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct

Deposited: 2023-08-09
Deposition Author(s): Adachi, N. , Kakuta, Y. , Koyasu, T. , Mayanagi, K. , Nakamura, T. , Senda, T. , Teramoto, T. , Yokogawa, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.19 Å

8kda
Literature

Cryo-em structure of hydrogenobacter thermophilus minimal protein-only rnase p (harp) in complex with pre-trnas

Adachi, N. , Kakuta, Y. , Koyasu, T. , Mayanagi, K. , Nakamura, T. , Senda, T. , Teramoto, T. , Yokogawa, T.

Primary Citation of Related Structures: 8KDA


Proteins
Molecule Chains Sequence Length Organism Sequence
RNA-free ribonuclease P E 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL
RNA-free ribonuclease P F 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL
RNA-free ribonuclease P G 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL
RNA-free ribonuclease P H 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL
RNA-free ribonuclease P C 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL
RNA-free ribonuclease P D 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL
RNA-free ribonuclease P I 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL
RNA-free ribonuclease P J 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL
RNA-free ribonuclease P A 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL
RNA-free ribonuclease P B 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL
RNA-free ribonuclease P K 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL
RNA-free ribonuclease P L 189 Hydrogenobacter Thermophilus Dsm 653 , Synthetic Construct MDTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYEFTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGLRIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLSYELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Aquifex aeolicus pre-tRNAVal t 73 NA AAGGCGCGUAGCUCAGUAGGGAGAGCGCCGGCCCGACACGCCGGAGGUCGGGGGUUCAAGUCCCCCCGCGCCU
Aquifex aeolicus pre-tRNAVal m 73 NA AAGGCGCGUAGCUCAGUAGGGAGAGCGCCGGCCCGACACGCCGGAGGUCGGGGGUUCAAGUCCCCCCGCGCCU
Aquifex aeolicus pre-tRNAVal n 73 NA AAGGCGCGUAGCUCAGUAGGGAGAGCGCCGGCCCGACACGCCGGAGGUCGGGGGUUCAAGUCCCCCCGCGCCU
Aquifex aeolicus pre-tRNAVal o 73 NA AAGGCGCGUAGCUCAGUAGGGAGAGCGCCGGCCCGACACGCCGGAGGUCGGGGGUUCAAGUCCCCCCGCGCCU
Aquifex aeolicus pre-tRNAVal p 73 NA AAGGCGCGUAGCUCAGUAGGGAGAGCGCCGGCCCGACACGCCGGAGGUCGGGGGUUCAAGUCCCCCCGCGCCU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-08-09
Deposition Author(s): Adachi, N. , Kakuta, Y. , Koyasu, T. , Mayanagi, K. , Nakamura, T. , Senda, T. , Teramoto, T. , Yokogawa, T.