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FASTA Sequence PDB Format mmCIF Format
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8KD9

Cryo-em structure of aquifex aeolicus minimal protein-only rnase p (harp) in complex with pre-trnas

PDB DOI: 10.2210/pdb8kd9/pdb

Classification: HYDROLASE-RNA COMPLEX
Organism(s): Aquifex Aeolicus Vf5 , Synthetic Construct

Deposited: 2023-08-09
Deposition Author(s): Adachi, N. , Kakuta, Y. , Koyasu, T. , Mayanagi, K. , Nakamura, T. , Senda, T. , Teramoto, T. , Yokogawa, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.87 Å

8kd9
Literature

Cryo-em structure of aquifex aeolicus minimal protein-only rnase p (harp) in complex with pre-trnas

Adachi, N. , Kakuta, Y. , Koyasu, T. , Mayanagi, K. , Nakamura, T. , Senda, T. , Teramoto, T. , Yokogawa, T.

Primary Citation of Related Structures: 8KD9


Proteins
Molecule Chains Sequence Length Organism Sequence
RNA-free ribonuclease P A 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH
RNA-free ribonuclease P B 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH
RNA-free ribonuclease P C 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH
RNA-free ribonuclease P D 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH
RNA-free ribonuclease P E 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH
RNA-free ribonuclease P F 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH
RNA-free ribonuclease P G 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH
RNA-free ribonuclease P H 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH
RNA-free ribonuclease P I 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH
RNA-free ribonuclease P J 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH
RNA-free ribonuclease P K 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH
RNA-free ribonuclease P L 190 Aquifex Aeolicus Vf5 , Synthetic Construct MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Aquifex aeolicus pre-tRNAVal t 73 NA AAGGCGCGUAGCUCAGUAGGGAGAGCGCCGGCCCGACACGCCGGAGGUCGGGGGUUCAAGUCCCCCCGCGCCU
Aquifex aeolicus pre-tRNAVal m 73 NA AAGGCGCGUAGCUCAGUAGGGAGAGCGCCGGCCCGACACGCCGGAGGUCGGGGGUUCAAGUCCCCCCGCGCCU
Aquifex aeolicus pre-tRNAVal n 73 NA AAGGCGCGUAGCUCAGUAGGGAGAGCGCCGGCCCGACACGCCGGAGGUCGGGGGUUCAAGUCCCCCCGCGCCU
Aquifex aeolicus pre-tRNAVal o 73 NA AAGGCGCGUAGCUCAGUAGGGAGAGCGCCGGCCCGACACGCCGGAGGUCGGGGGUUCAAGUCCCCCCGCGCCU
Aquifex aeolicus pre-tRNAVal p 73 NA AAGGCGCGUAGCUCAGUAGGGAGAGCGCCGGCCCGACACGCCGGAGGUCGGGGGUUCAAGUCCCCCCGCGCCU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-08-09
Deposition Author(s): Adachi, N. , Kakuta, Y. , Koyasu, T. , Mayanagi, K. , Nakamura, T. , Senda, T. , Teramoto, T. , Yokogawa, T.