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8KB5

Cryo-em structure of the human nucleosome containing h3.8

PDB DOI: 10.2210/pdb8kb5/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2023-08-03
Deposition Author(s): Hirai, H. , Kujirai, T. , Kurumizaka, H. , Takizawa, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.26133 Å

8kb5
Literature

Cryo-em structure of the human nucleosome containing h3.8

Hirai, H. , Kujirai, T. , Kurumizaka, H. , Takizawa, Y.

Primary Citation of Related Structures: 8KB5


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.8 A 145 Homo Sapiens , Synthetic Construct GSHMARTRWTARKSTGGIAPRKQLATKATCKSAPSTGGVKKPHRYRPGTVALREIRHYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRAAIGTLQEASEAYLVGLFEDTNLCAIHATRVTIMPKDIQLARHIRGERVSEYTMM
Histone H3.8 E 145 Homo Sapiens , Synthetic Construct GSHMARTRWTARKSTGGIAPRKQLATKATCKSAPSTGGVKKPHRYRPGTVALREIRHYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRAAIGTLQEASEAYLVGLFEDTNLCAIHATRVTIMPKDIQLARHIRGERVSEYTMM
Histone H4 B 106 Homo Sapiens , Synthetic Construct GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 106 Homo Sapiens , Synthetic Construct GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E C 133 Homo Sapiens , Synthetic Construct GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1-B/E G 133 Homo Sapiens , Synthetic Construct GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-J D 129 Homo Sapiens , Synthetic Construct GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-J H 129 Homo Sapiens , Synthetic Construct GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (145-MER) i 145 NA ATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGAT
DNA (145-MER) j 145 NA ATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-08-03
Deposition Author(s): Hirai, H. , Kujirai, T. , Kurumizaka, H. , Takizawa, Y.