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FASTA Sequence PDB Format mmCIF Format
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8K60

Cryo-em structure of streptomyces coelicolor transcription initiation complex with the global transcription factor afsr

PDB DOI: 10.2210/pdb8k60/pdb

Classification: GENE REGULATION
Organism(s): Streptomyces Coelicolor (Strain Atcc Baa-471 / A3(2) / M145) , Synthetic Construct

Deposited: 2023-07-24
Deposition Author(s): Lin, W. , Shi, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Literature

Cryo-em structure of streptomyces coelicolor transcription initiation complex with the global transcription factor afsr

Lin, W. , Shi, J.

Primary Citation of Related Structures: 8K60


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit alpha A 340 Streptomyces Coelicolor (Strain Atcc Baa-471 / A3(2) / M145) , Synthetic Construct MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHNPDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTDAALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAKLAGMGLALKDSPPGFDPTAAADAFGADDDADAGFVETEQY
DNA-directed RNA polymerase subunit alpha B 340 Streptomyces Coelicolor (Strain Atcc Baa-471 / A3(2) / M145) , Synthetic Construct MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHNPDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTDAALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAKLAGMGLALKDSPPGFDPTAAADAFGADDDADAGFVETEQY
DNA-directed RNA polymerase subunit alpha K 340 Streptomyces Coelicolor (Strain Atcc Baa-471 / A3(2) / M145) , Synthetic Construct MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHNPDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTDAALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAKLAGMGLALKDSPPGFDPTAAADAFGADDDADAGFVETEQY
DNA-directed RNA polymerase subunit beta C 1161 Streptomyces Coelicolor (Strain Atcc Baa-471 / A3(2) / M145) , Synthetic Construct MAASRNASTANTNNAASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNDAWKARVESALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKDRDFTYAAPLFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSIDKTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEFGEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVGRYKVNKKLGADEPLDAGVLTTDDVIATIKYLVKLHAGETETVGESGREIVVETDDIDHFGNRRIRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQNNPLSGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLASYGRINPFGFIETPYRKVVEGQVTDDVDYLTADEEDRFVIAQANAALGDDMRFAEARVLVRRRGGEVDYVPGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQAVPLIKSESPLVGTGMEYRSAADAGDVVKAEKAGVVQEVSADYITTTNDDGTYITYRLAKFSRSNQGTSVNQKVIVAEGDRIIEGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGAEVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKINPIEDMPFLEDGTPVDIILNPLAVPSRMNPGQVLEIHLGWLASRGWDVSGLAEEWAQRLQVIGADKVEPGTNVATPVFDGAREDELAGLLQHTIPNRDGERMVLPSGKARLFDGRSGEPFPEPISVGYMYILKLHHLVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFRAAEELGIDLSRREPSSVEEV
DNA-directed RNA polymerase subunit beta' D 1299 Streptomyces Coelicolor (Strain Atcc Baa-471 / A3(2) / M145) , Synthetic Construct MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQIEQRRDSDLEARAKKLETDLAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELLYRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVSAFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGRTVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQMAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDSEGRSPKGEGRAFGSSAEAIMAFDAGDLTLQAKIDIRFPVGTIPPRGFEPPAREEGEPEWQQGDTFTLKTTLGRALFNELLPEDYPFVDYEVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFFWATRSGVTVAISDIVVPDAKKEIVKGYEGQDEKVQKQYERGLITKEERTQELIAIWTKATNEVAEAMNDNFPKTNPVSMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLPIATRDADGTLRKAEDVETSVYARMLAEDVVIDGKVIAPANVDLGDVLIDALVAHGVEEVKTRSILTCESQVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVVELFEARTPKGVAPISEASGRVRIEETEKTKKIVVTPDDGSDETAFPISKRARLLVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEIIIRQMLRRVTIIESGDAELLPGELVERTKFETENRRVVQEGGHPASGRPQLMGITKASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
DNA-directed RNA polymerase subunit omega E 90 Streptomyces Coelicolor (Strain Atcc Baa-471 / A3(2) / M145) , Synthetic Construct MSSSISAPEGIINPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREINAGLLTSEAIEGPAQ
RNA polymerase principal sigma factor HrdB F 511 Streptomyces Coelicolor (Strain Atcc Baa-471 / A3(2) / M145) , Synthetic Construct MSASTSRTLPPEIAESVSVMALIERGKAEGQIAGDDVRRAFEADQIPATQWKNVLRSLNQILEEEGVTLMVSAAEPKRTRKSVAAKSPAKRTATKAVAAKPVTSRKATAPAAPAAPATEPAAVEEEAPAKKAAAKKTTAKKATAKKTTAKKAAAKKTTAKKEDGELLEDEATEEPKAATEEPEGTENAGFVLSDEDEDDAPAQQVAAAGATADPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAEDKLANSDKLAPKLKRELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Regulatory protein AfsR I 993 Streptomyces Coelicolor (Strain Atcc Baa-471 / A3(2) / M145) , Synthetic Construct MDGGPRVPEQRRPGFPAEEEESGALRFGVLGPVRAWRDGETLATGSPQQRALLAALLLREGRTATAGELIDALWGEEPPSQALAAVRTYASRLRKVLDPGVLVSESGGYAVRGLAEGALDLARAQDLASAAEKARSAGDLCHARDLLRRALDLWDGEVLAGVPGPYAQTQRVRLGEWRLQLLETRLDMDLDQGCHAEAVSELTALTAAHPLRERLRELLMLALYRSGRQAEALAVYADTRRLLADELGVDPRPGLQELQQRILQADPALAELSAATAETATATLRPAQLPATVSDFTGRAAFVRELSDVLSAASGESASGRVMAVSALAGIGGVGKTTLAVHVAHRARAAFPDGQLYVDLQGAGARPAEPETVLGSFLRALGTADSAIPDSLEERAALYRSVLDGRRVLVLLDNARDAAQVRPLLPGTDGCAALVTARVRMVDLAGAHLVDLDVMAPEEALALFTKIVGEERVASERQAALDVVGACGFLPLAIRIAASRLAARRTWTVSVLAAKLADERRRLDELQAGDQAVEATFELGYGQLEPAQARAFRLLGLADGPDISLAAAAAVLDLPAQDTEDLLESLVDTSLLESAAPGRYRFHDLVRLYARACAERTERDGNAPSERGAALSRLLDFYLATAAGVYAIERPGDRLVDGLEPTEYPGLTFTEGSAALDWLYTEAAPLLACVRQSAGTARLRRAVDLLWAAKDLTESGANSHQYEATARAMCDATGSAADTRAEGRARTVLSDVLLVSGRIEHAEEEARLAMRLAGSAEDSAAVSWVANNRGLVCLHQRRYAEGKGLFHQAIAGFRATDNRAGEASALSNLSRAQLGMGNVAEAVDIARQGLAVYAELGRTMRLANGHFALGVALTRAGRHEEALGEFAEALDLFGDHRQRLWEGATNFRLAEVHLAAGRPSSAAQHAEQALALGCIGGDRMRGNVLALLGRALSALGQADRARACWREALSLYEQHDAQEVGEVRALLARSVAR
Regulatory protein AfsR J 993 Streptomyces Coelicolor (Strain Atcc Baa-471 / A3(2) / M145) , Synthetic Construct MDGGPRVPEQRRPGFPAEEEESGALRFGVLGPVRAWRDGETLATGSPQQRALLAALLLREGRTATAGELIDALWGEEPPSQALAAVRTYASRLRKVLDPGVLVSESGGYAVRGLAEGALDLARAQDLASAAEKARSAGDLCHARDLLRRALDLWDGEVLAGVPGPYAQTQRVRLGEWRLQLLETRLDMDLDQGCHAEAVSELTALTAAHPLRERLRELLMLALYRSGRQAEALAVYADTRRLLADELGVDPRPGLQELQQRILQADPALAELSAATAETATATLRPAQLPATVSDFTGRAAFVRELSDVLSAASGESASGRVMAVSALAGIGGVGKTTLAVHVAHRARAAFPDGQLYVDLQGAGARPAEPETVLGSFLRALGTADSAIPDSLEERAALYRSVLDGRRVLVLLDNARDAAQVRPLLPGTDGCAALVTARVRMVDLAGAHLVDLDVMAPEEALALFTKIVGEERVASERQAALDVVGACGFLPLAIRIAASRLAARRTWTVSVLAAKLADERRRLDELQAGDQAVEATFELGYGQLEPAQARAFRLLGLADGPDISLAAAAAVLDLPAQDTEDLLESLVDTSLLESAAPGRYRFHDLVRLYARACAERTERDGNAPSERGAALSRLLDFYLATAAGVYAIERPGDRLVDGLEPTEYPGLTFTEGSAALDWLYTEAAPLLACVRQSAGTARLRRAVDLLWAAKDLTESGANSHQYEATARAMCDATGSAADTRAEGRARTVLSDVLLVSGRIEHAEEEARLAMRLAGSAEDSAAVSWVANNRGLVCLHQRRYAEGKGLFHQAIAGFRATDNRAGEASALSNLSRAQLGMGNVAEAVDIARQGLAVYAELGRTMRLANGHFALGVALTRAGRHEEALGEFAEALDLFGDHRQRLWEGATNFRLAEVHLAAGRPSSAAQHAEQALALGCIGGDRMRGNVLALLGRALSALGQADRARACWREALSLYEQHDAQEVGEVRALLARSVAR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Non-template strand DNA for AfsS promoter g 59 NA CCGGAGCGTTCAGCGTTCGTTTATCTCCCCCTGGTATAATGGGAGCTGTCACGGATGCA
Template strand DNA for AfsS promoter h 59 NA TGCATCCGTGAGTCGAGGGTAATAACCAGGGGGAGATAAACGAACGCTGAACGCTCCGG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-07-24
Deposition Author(s): Lin, W. , Shi, J.