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FASTA Sequence PDB Format mmCIF Format
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8K29

Icp1 csy-dsdna complex (form 2)

PDB DOI: 10.2210/pdb8k29/pdb

Classification: RNA BINDING PROTEIN/DNA/RNA
Organism(s): Vibrio Phage Icp1_2004_A

Deposited: 2023-07-12
Deposition Author(s): Feng, Y. , Zhang, L.X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.18 Å

8k29
Literature

Icp1 csy-dsdna complex (form 2)

Feng, Y. , Zhang, L.X.

Primary Citation of Related Structures: 8K29


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (60-MER) p 60 NA CUUAAAGAGUCAACCCUUUGCUUAUCUUCCCUAUUUAAAUGUUAGCAGCCGCAUAGGCUG
DNA (43-MER) q 43 NA AGCAATTTAAATAGGGAAGATAAGCAAAGGGTTGACGAAAGCC
DNA (5'-D(P*GP*GP*CP*TP*TP*TP*CP*GP*TP*CP*AP*AP*CP*CP*CP*TP*TP*TP*GP*CP*TP*TP*AP*T)-3') r 24 NA GGCTTTCGTCAACCCTTTGCTTAT

Proteins
Molecule Chains Sequence Length Organism Sequence
Csy1 A 179 Vibrio Phage Icp1_2004_A MIKEMIEDFISKGGLIFTHSGRYTNTNNSCFIFNKNDIGVDTKVDMYTPKSAGIKNEEGENLWQVLNKANMFYRIYSGELGEELQYLLKSCCTAKEDVTTLPQIYFKNGEGYDILVPIGNAHNLISGTEYLWEHKYYNTFTQKLGGSNPQNCTHACNKMRGGFKQFNCTPPQVEDNYNA
Csy2 B 248 Vibrio Phage Icp1_2004_A MRKFIIVKNVKVDGINAKSSDITVGMPPATTFCGLGETMSIKTGIVVKAVSYGSVKFEVRGSRFNTSVTKFAWQDRGNGGKANNNSPIQPKPLADGVFTLCFEVEWEDCAEVLVDKVTNFINTARIAGGTIASFNKPFVKVAKDAEELASVKNAMMPCYVVVDCGVEVNIFEDAVNRKLQPMVNGYKKLEKIVDNKHMRDKFTPAYLATPTYTMIGYKMVSNVDNFDQALWQYGENTKVKTIGGIYND
Csy3 C 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy3 D 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy3 E 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy3 F 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy3 G 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy3 H 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy4 I 168 Vibrio Phage Icp1_2004_A MYNTISITVVDADDVGVNFVVSKVLSTLHNKGIFNGEVGVTFPRMDKNVGDIITLFSKTGVDRKVLTSTLNTLTDFIHIGKPKEADKVKTYRKVDTKSKGKLIRRCIKRKGVSAETAESLYGNYKGEKCKLPYIVVNSKSTGQRFSMFLEECENSEKFNSYGLCIVSC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-07-12
Deposition Author(s): Feng, Y. , Zhang, L.X.