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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8K24

Icp1 csy-dsdna-cas1-cas2/3 complex (fully assembled form), c2 symmetry

PDB DOI: 10.2210/pdb8k24/pdb

Classification: RNA BINDING PROTEIN/DNA/RNA
Organism(s): Vibrio Phage Icp1_2004_A

Deposited: 2023-07-12
Deposition Author(s): Feng, Y. , Zhang, L.X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.72 Å

8k24
Literature

Icp1 csy-dsdna-cas1-cas2/3 complex (fully assembled form), c2 symmetry

Feng, Y. , Zhang, L.X.

Primary Citation of Related Structures: 8K24


Proteins
Molecule Chains Sequence Length Organism Sequence
HD Cas3-type domain-containing protein A 930 Vibrio Phage Icp1_2004_A MFIRIKCFSKQPIAKKVSREVSAYLEYTGNNTWEGHISGQGVSNLQTKLINVGKGVKVVCNYQDKVLFAIGNVAMSDTGSVPKYTTKKVYKPDDSIFTLKQGLVGVAALWHDLGKANSYFQRKLRGECNPSDPVRHEWVSGVIVSTFAKGNDWLSDDFIIPEVKHSDNVFGDDQVLNAVLWLINTHHKKGLVEDPIYRATKTMFTETLQCVNVNGGWFNYGDNIDECYKIDTSFITDTYVKQLNRYRKKLLATKHIWFTLGEDQKIAILQECRVALMLGDSNFSSDLIGGDGSHLYANLDECGNLKQTLTQHLLGVTDCALKALFTINHHKPVKANFIPTIAEKGEGKFAWQNGVNMVDSSIDNMFCINMASTGKGKTLANLKLLQHFGNVRCSFGLGMVSLTKQTAKQFLDMGVDYNSAAMVTGFSKSRFNLGSESLDQDEVSVEYWGQTSSLSKVFPNNNAGFKNKKLLSAPILVTTTDHLVKASGVKKGNKQMLPYVRCMHSDLVLDEIDDYGIEDMVVLARLVYLTACYGNKVIISSATITPAISNIFYEAYSSGYKVFCANKQTTYKGVNVVWWDEFGIKVEKVTDQFSNLNTRFVNKRITNLLESTPKHKALVVDQDDNMEAVKQSITTLHNAHNSGGVSFGLIRTTTIKDCVAVTQELQNWETDLSIKILCYHSRFVGDTKAQMEEYLSKVLNRKGDEYKKFVDTTTPTAYIVVATPVVEVGRDFDFDWAIIEPSSERSIVQCAGRVLRHRSSTPTTHNIHILKYPFKFYRNSNICYDVAGYESKGYKLKSKNMLDIYKKESIVNSVNRLQGDAAFYTKSLTALEHKVLLDKLTTDIADTNVFVGGWQLTANPHEYCKWRRGTKNEDLVLTDGKWSGNVTTTKPIQSKIWRKWQGENGSITVPEYLLDKTICYNDFYGGYENE
Csy1 B 179 Vibrio Phage Icp1_2004_A MIKEMIEDFISKGGLIFTHSGRYTNTNNSCFIFNKNDIGVDTKVDMYTPKSAGIKNEEGENLWQVLNKANMFYRIYSGELGEELQYLLKSCCTAKEDVTTLPQIYFKNGEGYDILVPIGNAHNLISGTEYLWEHKYYNTFTQKLGGSNPQNCTHACNKMRGGFKQFNCTPPQVEDNYNA
Csy2 C 248 Vibrio Phage Icp1_2004_A MRKFIIVKNVKVDGINAKSSDITVGMPPATTFCGLGETMSIKTGIVVKAVSYGSVKFEVRGSRFNTSVTKFAWQDRGNGGKANNNSPIQPKPLADGVFTLCFEVEWEDCAEVLVDKVTNFINTARIAGGTIASFNKPFVKVAKDAEELASVKNAMMPCYVVVDCGVEVNIFEDAVNRKLQPMVNGYKKLEKIVDNKHMRDKFTPAYLATPTYTMIGYKMVSNVDNFDQALWQYGENTKVKTIGGIYND
Cas1 D 302 Vibrio Phage Icp1_2004_A MQKQILTSQKRNMYILSRCKVLVKNGQVCHLHEDGNVYTVPYANTVFIGLAEGTSITNEAMSMLAANGVIVFWTKGGGYDMFAADIICHLPQADYRPTKYMQNWVRLWLDEEKKLSAAKEILKMRVDSLSTHVHDFGVDVENKRVSSIVNKFDKGVTQATSFESLLGHEGTFVKSLYKEYALEYEIEFKRDHKSADNYNKFLTLGNYYAYGIARSSLWALGIDNSFPLLHGSTRRGGLVFDVADIIKTSIILPLAFHAADQGMSNTEFKRSCVAYFDKNDILAYLINNIKRLCMENSDVHQD
Cas1 E 302 Vibrio Phage Icp1_2004_A MQKQILTSQKRNMYILSRCKVLVKNGQVCHLHEDGNVYTVPYANTVFIGLAEGTSITNEAMSMLAANGVIVFWTKGGGYDMFAADIICHLPQADYRPTKYMQNWVRLWLDEEKKLSAAKEILKMRVDSLSTHVHDFGVDVENKRVSSIVNKFDKGVTQATSFESLLGHEGTFVKSLYKEYALEYEIEFKRDHKSADNYNKFLTLGNYYAYGIARSSLWALGIDNSFPLLHGSTRRGGLVFDVADIIKTSIILPLAFHAADQGMSNTEFKRSCVAYFDKNDILAYLINNIKRLCMENSDVHQD
Csy3 G 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy3 I 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy3 J 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy3 K 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy3 L 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy3 M 306 Vibrio Phage Icp1_2004_A MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGGKD
Csy4 H 168 Vibrio Phage Icp1_2004_A MYNTISITVVDADDVGVNFVVSKVLSTLHNKGIFNGEVGVTFPRMDKNVGDIITLFSKTGVDRKVLTSTLNTLTDFIHIGKPKEADKVKTYRKVDTKSKGKLIRRCIKRKGVSAETAESLYGNYKGEKCKLPYIVVNSKSTGQRFSMFLEECENSEKFNSYGLCIVSC

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*AP*TP*CP*TP*TP*CP*CP*CP*TP*AP*TP*TP*TP*AP*AP*AP*TP*TP*GP*CP*T)-3') v 21 NA ATCTTCCCTATTTAAATTGCT
RNA (60-MER) p 60 NA CUUAAAGAGUCAACCCUUUGCUUAUCUUCCCUAUUUAAAUGUUAGCAGCCGCAUAGGCUG
DNA (43-MER) q 43 NA AGCAATTTAAATAGGGAAGATAAGCAAAGGGTTGACGAAAGCC
DNA (43-MER) u 43 NA AGCAATTTAAATAGGGAAGATAAGCAAAGGGTTGACGAAAGCC
DNA (31-MER) r 31 NA GGCTTTCGTCAACCCTTTGCTTATCTTCCCT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-07-12
Deposition Author(s): Feng, Y. , Zhang, L.X.