PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8JVA

Cryo-em structure of the n-terminal domain of omicron ba.1 in complex with nanobody n235 and s2l20 fab

PDB DOI: 10.2210/pdb8jva/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos

Deposited: 2023-06-28
Deposition Author(s): Han, P. , Liu, B. , Liu, H.H. , Qi, J.X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.81 Å

8jva
Literature

Cryo-em structure of the n-terminal domain of omicron ba.1 in complex with nanobody n235 and s2l20 fab

Han, P. , Liu, B. , Liu, H.H. , Qi, J.X.

Primary Citation of Related Structures: 8JVA


Proteins
Molecule Chains Sequence Length Organism Sequence
nanobody N235 D 126 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos QVQLQESGGGLVQPGGSLRLSCAASGLIISRYDMSWYRQAPGKERELVATTPIPAARPQYADSVKGRFTISRDNAKNTVSLQMNSLKPEDTAVYYCNLGPESQDHNYNYWGQGTQVTVSSHHHHHH
S2L20 light chain A 236 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos METDTLLLWVLLLWVPGSTGDVIWMTQSPSSLSASVGDRVTITCQASQDIRFYLNWYQQKPGKAPKLLISDASNMETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPFTFGPGTKVDFKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
S2L20 heavy chain B 473 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos METDTLLLWVLLLWVPGSTGDEVQLVESGGGVVQPGGSLRLSCAASGFTFNSYGMHWVRQAPGKGLEWVAFIRYDGGNKYYADSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCANLKDSRYSGSYYDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
Spike protein S2' F 300 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNPVLPFNDGVYFASIEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIVREPEDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-06-28
Deposition Author(s): Han, P. , Liu, B. , Liu, H.H. , Qi, J.X.