8JTJ
Cryo-em structure of geocas9-sgrna-dsdna ternary complex
PDB DOI: 10.2210/pdb8jtj/pdb
Classification: DNA BINDING PROTEIN/RNA/DNA Organism(s): Geobacillus Stearothermophilus , Synthetic Construct
Deposited: 2023-06-21 Deposition Author(s): Chen, C.-C. , Guo, R.-T. , Li, X. , Liu, B.B. , Shen, P.P. , Zhang, L.L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.08 Å
Cryo-em structure of geocas9-sgrna-dsdna ternary complex
Chen, C.-C. , Guo, R.-T. , Li, X. , Liu, B.B. , Shen, P.P. , Zhang, L.L.
Primary Citation of Related Structures: 8JTJ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CRISPR-associated endonuclease Cas9 | A | 1095 | Geobacillus Stearothermophilus , Synthetic Construct | MRYKIGLDIGITSVGWAVMNLDIPRIEDLGVRIFDRAENPQTGESLALPRRLARSARRRLRRRKHRLERIRRLVIREGILTKEELDKLFEEKHEIDVWQLRVEALDRKLNNDELARVLLHLAKRRGFKSNRKSERSNKENSTMLKHIEENRAILSSYRTVGEMIVKDPKFALHKRNKGENYTNTIARDDLEREIRLIFSKQREFGNMSCTEEFENEYIAIWASQRPVASKDDIEKKVGFCAFEPKEKRAPKATYTFQSFIAWEHINKLRLISPSGARGLTDEERRLLYEQAFQKNKITYHDIRTLLHLPDDTYFKGIVYDRGESRKQNENIRFLELDAYHQIRKAVDKVYGKEKSSSFLPIDFDTFGYALTLFKDDADIHSYLRNEYEQNGKRMPNLANKVYDNELIEELLNLSFTKFGHLSLKALRSILPYMEQGEVYSSACERAGYTFTGPKKKQKTMLLPNIPPIANPVVMRALTQARKVVNAIIKKYGSPVSIHIELARDLSQTFDERRKTKKEQDENRKKNETAIRQLMEYGLTLNPTGHDIVKFKLWSEQNGRCAYSLQPIEIERLLEPGYVEVDAVIPYSRSLDDSYTNKVLVLTRENREKGNRIPAEYLGVGTERWQQFETFVLTNKQFSKKKRDRLLRLHYDENEETEFKNRNLNDTRYISRFFANFIREHLKFAESDDKQKVYTVNGRVTAHLRSRWEFNKNREESDLHHAVDAVIVACTTPSDIAKVTAFYQRREQNKELAKKTEPHFPQPWPHFADELRARLSKHPKESIKALNLGNYDDQKLESLQPVFVSRMPKRSVTGAAHQETLRRYVGIDERSGKIQTVVKTKLSEIKLDASGHFPMYGKESDPRTYEAIRQRLLEHNNDPKKAFQEPLYKPKKNGEPGPVIRTVKIIDTKNQVIPLNDGKTVAYNSNIVRVDVFEKDGKYYCVPVYTMDIMKGILPNKAIEPNKPYSEWKEMTEDYTFRFSLYPNDLIRIELPREKTVKTAAGEEINVKDVFVYYKTIDSANGGLELISHDHRFSLRGVGSRTLKRFEKYQVDVLGNIYKVRGEKRVGLASSAHSKPGKTIRPLQSTRDLEHHHHHH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (139-MER) | b | 139 | NA | GGCGCAUAAAGAUGAGACGCGGUCAUAGUUCCCCUGAGAAAUCAGGGUUACUAUGAUAAGGGCUUUCUGCCUAAGGCAGACUGACCCGCGGCGUUGGGGAUCGCCUGUCGCCCGCUUUUGGCGGGCAUUCCCCAUCCUU |
| DNA (29-MER) | c | 29 | NA | TTCGCGCCCGCGTCTCATCTTTATGCGCC |
| DNA (5'-D(P*GP*GP*GP*CP*GP*CP*GP*AP*A)-3') | d | 9 | NA | GGGCGCGAA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-06-21 Deposition Author(s): Chen, C.-C. , Guo, R.-T. , Li, X. , Liu, B.B. , Shen, P.P. , Zhang, L.L.