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8JMK

Structure of helicobacter pylori soj mutant, d41a bound to dna

PDB DOI: 10.2210/pdb8jmk/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Flavobacterium Johnsoniae Uw101 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-06-05
Deposition Author(s): Chu, C.H. , Sun, Y.J. , Wu, C.T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.7 Å

Literature

Structure of helicobacter pylori soj mutant, d41a bound to dna

Chu, C.H. , Sun, Y.J. , Wu, C.T.

Primary Citation of Related Structures: 8JMK


Proteins
Molecule Chains Sequence Length Organism Sequence
SpoOJ regulator (Soj) A 264 Flavobacterium Johnsoniae Uw101 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MMSEIIAVANQKGGVGKTTTAVNLAASLAVHEKKILLIDFAPQANATSSLGFRRDKIDYDIYHVLIGRKQISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVVGLYDYIIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIRMLQKSTNPKLKIRGFLPTMHVPQLNLTKGVLAELFKYFDSEFFRDSATGEYIMIPKSVKLAESPSFGKPILLYDIKSNGSIAYQKLAQSILQG
SpoOJ regulator (Soj) B 264 Flavobacterium Johnsoniae Uw101 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MMSEIIAVANQKGGVGKTTTAVNLAASLAVHEKKILLIDFAPQANATSSLGFRRDKIDYDIYHVLIGRKQISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVVGLYDYIIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIRMLQKSTNPKLKIRGFLPTMHVPQLNLTKGVLAELFKYFDSEFFRDSATGEYIMIPKSVKLAESPSFGKPILLYDIKSNGSIAYQKLAQSILQG
SpoOJ regulator (Soj) C 264 Flavobacterium Johnsoniae Uw101 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MMSEIIAVANQKGGVGKTTTAVNLAASLAVHEKKILLIDFAPQANATSSLGFRRDKIDYDIYHVLIGRKQISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVVGLYDYIIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIRMLQKSTNPKLKIRGFLPTMHVPQLNLTKGVLAELFKYFDSEFFRDSATGEYIMIPKSVKLAESPSFGKPILLYDIKSNGSIAYQKLAQSILQG
SpoOJ regulator (Soj) D 264 Flavobacterium Johnsoniae Uw101 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MMSEIIAVANQKGGVGKTTTAVNLAASLAVHEKKILLIDFAPQANATSSLGFRRDKIDYDIYHVLIGRKQISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVVGLYDYIIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIRMLQKSTNPKLKIRGFLPTMHVPQLNLTKGVLAELFKYFDSEFFRDSATGEYIMIPKSVKLAESPSFGKPILLYDIKSNGSIAYQKLAQSILQG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*CP*CP*CP*TP*GP*TP*TP*TP*CP*AP*CP*GP*TP*GP*GP*AP*AP*CP*AP*CP*CP*CP*T)-3') e 24 NA TCCCTGTTTCACGTGGAACACCCT
DNA (5'-D(P*AP*GP*GP*GP*TP*GP*TP*TP*CP*CP*AP*CP*GP*TP*GP*AP*AP*AP*CP*AP*GP*GP*GP*A)-3') f 24 NA AGGGTGTTCCACGTGAAACAGGGA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-06-05
Deposition Author(s): Chu, C.H. , Sun, Y.J. , Wu, C.T.