8JLA
Cryo-em structure of the human nucleosome lacking n-terminal region of h2a, h2b, h3, and h4
PDB DOI: 10.2210/pdb8jla/pdb
Classification: GENE REGULATION/DNA Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2023-06-02 Deposition Author(s): Akatsu, M. , Hatazawa, S. , Kato, J. , Kobayashi, Y. , Kujirai, T. , Kurumizaka, H. , Ogasawara, M. , Oishi, T. , Takizawa, Y.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.44 Å
Cryo-em structure of the human nucleosome lacking n-terminal region of h2a, h2b, h3, and h4
Akatsu, M. , Hatazawa, S. , Kato, J. , Kobayashi, Y. , Kujirai, T. , Kurumizaka, H. , Ogasawara, M. , Oishi, T. , Takizawa, Y.
Primary Citation of Related Structures: 8JLA
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3.1 | A | 112 | Homo Sapiens , Synthetic Construct | GSHMSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3.1 | E | 112 | Homo Sapiens , Synthetic Construct | GSHMSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | B | 91 | Homo Sapiens , Synthetic Construct | GSHMKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 91 | Homo Sapiens , Synthetic Construct | GSHMKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A type 1-B/E | C | 124 | Homo Sapiens , Synthetic Construct | GSHMARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2A type 1-B/E | G | 124 | Homo Sapiens , Synthetic Construct | GSHMARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2B type 1-J | D | 105 | Homo Sapiens , Synthetic Construct | GSHMDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B type 1-J | H | 105 | Homo Sapiens , Synthetic Construct | GSHMDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (193-MER) | i | 193 | NA | ATCACGTAATATTGGCCAGCTAGGATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATCCTAGCTGGCCAATATTACGTGAT |
| DNA (193-MER) | j | 193 | NA | ATCACGTAATATTGGCCAGCTAGGATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATCCTAGCTGGCCAATATTACGTGAT |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-06-02 Deposition Author(s): Akatsu, M. , Hatazawa, S. , Kato, J. , Kobayashi, Y. , Kujirai, T. , Kurumizaka, H. , Ogasawara, M. , Oishi, T. , Takizawa, Y.