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8JKK

Crystal structure of the dioxygenase cctet from coprinopsis cinerea bound to 12bp 5-methylcytosine (5mc) containing duplex dna

PDB DOI: 10.2210/pdb8jkk/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Escherichia Coli , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-06-01
Deposition Author(s): Zhang, L. , Zhang, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.3 Å

8jkk
Literature

Crystal structure of the dioxygenase cctet from coprinopsis cinerea bound to 12bp 5-methylcytosine (5mc) containing duplex dna

Zhang, L. , Zhang, L.

Primary Citation of Related Structures: 8JKK


Proteins
Molecule Chains Sequence Length Organism Sequence
2OGFeDO JBP1/TET oxygenase domain-containing protein A 415 Escherichia Coli , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSAIPFSTDDCSQDETLPSLLLIDEAAAVLGRMIQGLRTGIPYIHTENDSIKANPILRTALWQAAYVLEKAYRRRYRVPWTARRYMRELTPRQDGRNANREAVMAKEFPPGAELNSDHPVQEILPAMIIDAEDHILFCYLPSCVSPAIMTIIDAAVGTLATTKDGHLQKKSRAREGERARVEMQKVKGKGKQEEEGQEKLGANWREALDLFRQGACKMTPGVLTFAPAWWPVGHENQLPGPASTLKPPKGEGRMFLSDIPIASALVGAILAQINQPLFESGVKVLRELYSNSKLTKDHSTVSKIIEIWFSPFSSLSLIVNRATPIHRDTSGPIEGMDILVTGGNYSNGVLVTPSFNRRWTYNPGCVVALLGKLVLHGVPEVDGERYCMAHFWRERLFDAAGVPFPYPSKWQESYT
2OGFeDO JBP1/TET oxygenase domain-containing protein D 415 Escherichia Coli , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSAIPFSTDDCSQDETLPSLLLIDEAAAVLGRMIQGLRTGIPYIHTENDSIKANPILRTALWQAAYVLEKAYRRRYRVPWTARRYMRELTPRQDGRNANREAVMAKEFPPGAELNSDHPVQEILPAMIIDAEDHILFCYLPSCVSPAIMTIIDAAVGTLATTKDGHLQKKSRAREGERARVEMQKVKGKGKQEEEGQEKLGANWREALDLFRQGACKMTPGVLTFAPAWWPVGHENQLPGPASTLKPPKGEGRMFLSDIPIASALVGAILAQINQPLFESGVKVLRELYSNSKLTKDHSTVSKIIEIWFSPFSSLSLIVNRATPIHRDTSGPIEGMDILVTGGNYSNGVLVTPSFNRRWTYNPGCVVALLGKLVLHGVPEVDGERYCMAHFWRERLFDAAGVPFPYPSKWQESYT
2OGFeDO JBP1/TET oxygenase domain-containing protein G 415 Escherichia Coli , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSAIPFSTDDCSQDETLPSLLLIDEAAAVLGRMIQGLRTGIPYIHTENDSIKANPILRTALWQAAYVLEKAYRRRYRVPWTARRYMRELTPRQDGRNANREAVMAKEFPPGAELNSDHPVQEILPAMIIDAEDHILFCYLPSCVSPAIMTIIDAAVGTLATTKDGHLQKKSRAREGERARVEMQKVKGKGKQEEEGQEKLGANWREALDLFRQGACKMTPGVLTFAPAWWPVGHENQLPGPASTLKPPKGEGRMFLSDIPIASALVGAILAQINQPLFESGVKVLRELYSNSKLTKDHSTVSKIIEIWFSPFSSLSLIVNRATPIHRDTSGPIEGMDILVTGGNYSNGVLVTPSFNRRWTYNPGCVVALLGKLVLHGVPEVDGERYCMAHFWRERLFDAAGVPFPYPSKWQESYT
2OGFeDO JBP1/TET oxygenase domain-containing protein J 415 Escherichia Coli , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSAIPFSTDDCSQDETLPSLLLIDEAAAVLGRMIQGLRTGIPYIHTENDSIKANPILRTALWQAAYVLEKAYRRRYRVPWTARRYMRELTPRQDGRNANREAVMAKEFPPGAELNSDHPVQEILPAMIIDAEDHILFCYLPSCVSPAIMTIIDAAVGTLATTKDGHLQKKSRAREGERARVEMQKVKGKGKQEEEGQEKLGANWREALDLFRQGACKMTPGVLTFAPAWWPVGHENQLPGPASTLKPPKGEGRMFLSDIPIASALVGAILAQINQPLFESGVKVLRELYSNSKLTKDHSTVSKIIEIWFSPFSSLSLIVNRATPIHRDTSGPIEGMDILVTGGNYSNGVLVTPSFNRRWTYNPGCVVALLGKLVLHGVPEVDGERYCMAHFWRERLFDAAGVPFPYPSKWQESYT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*CP*GP*AP*TP*CP*(5CM)P*GP*CP*TP*AP*CP*G)-3') b 12 NA CGATCCGCTACG
DNA (5'-D(P*CP*GP*AP*TP*CP*(5CM)P*GP*CP*TP*AP*CP*G)-3') e 12 NA CGATCCGCTACG
DNA (5'-D(P*CP*GP*AP*TP*CP*(5CM)P*GP*CP*TP*AP*CP*G)-3') h 12 NA CGATCCGCTACG
DNA (5'-D(P*CP*GP*AP*TP*CP*(5CM)P*GP*CP*TP*AP*CP*G)-3') k 12 NA CGATCCGCTACG
DNA (5'-D(P*CP*GP*TP*AP*GP*CP*TP*GP*AP*TP*CP*G)-3') c 12 NA CGTAGCTGATCG
DNA (5'-D(P*CP*GP*TP*AP*GP*CP*TP*GP*AP*TP*CP*G)-3') f 12 NA CGTAGCTGATCG
DNA (5'-D(P*CP*GP*TP*AP*GP*CP*TP*GP*AP*TP*CP*G)-3') i 12 NA CGTAGCTGATCG
DNA (5'-D(P*CP*GP*TP*AP*GP*CP*TP*GP*AP*TP*CP*G)-3') l 12 NA CGTAGCTGATCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-06-01
Deposition Author(s): Zhang, L. , Zhang, L.