8JJR
Cryo-em structure of symbiodinium photosystem i
PDB DOI: 10.2210/pdb8jjr/pdb
Classification: PHOTOSYNTHESIS Organism(s): Symbiodinium Sp.
Deposited: 2023-05-31 Deposition Author(s): Li, K. , Liu, L.N. , Wang, N. , Zhang, Y.Z. , Zhao, L.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
Cryo-em structure of symbiodinium photosystem i
Li, K. , Liu, L.N. , Wang, N. , Zhang, Y.Z. , Zhao, L.S.
Primary Citation of Related Structures: 8JJR
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| PsaA | A | 687 | Symbiodinium Sp. | AIFRYVNATLWSKAGHFNKALSKGAKTTTWIWNLHASAHDFDIQQGSAGLIARKVFSSGLAHLSLVFFWLGGMHFHGAYLSNYSAWLKDPKSVAPSSHIAYSLVGQDILNSYTSQYFSGITITSGFFQLYRSEGIVTQSQLKYACAASLIATLICLSGSYLHMQLMSKFTSFYKKFQSLSQSHLIIMFGFGSVSFSAHQIHEALPINSLLDSGIWDPQLFSAITGKSTMAILLGTPSAITGKLLNPSTGSIFLSQVAAHHLAVGIVFITLGLIKWCNLFFSRNAILSLRLAYMDYHAQLSINLAVWASLSMVAAHHLTEIPVYPYESTDYPTVLCLFVHHACLSGFFTVASGAHASIFVIRQLPTSEIRHRDPIIGHLIWVCIALGLHSFGLYCHNDTLEALGRPEDTFCDNSIQLKPIFAKQFLGLQPGIEVLDGKIVRMTQELGTADFMVHHIHAFTIHVTLLILLKGVLYARNSRLVSDKLELGFAYPCDGPGRGGTCQISPWDHLFLAVFWMYNCLSVVIFHYFWKMQSDVWGSYVHLSQHLQLHCCSSLAHSSLTCSHYSQGDFSVNSITINGWLRNLLWSEASQVIQSYALPSICSYGFIFLAAHFVWAFSLMFLFSGRAYWQELIESILWSHHKLKIVPHIQPRALSISQGRAVGLTHYVLGGIGCTWAFIISRMLVLTT |
| PsaJ | J | 141 | Symbiodinium Sp. | MARFTNLILVAACVLLGNRFYTLLFANAPSQNLRSHVAVRAVDERDEGLVLITPEESGKVVKRDVNNNPPRIVMKTNDWDQPEIQLSTGASNQINYITPVVASDDIKAWLSLNVNFFSILALLTVGGIIEIQRFFPDTLYW |
| PCPI-13 | K | 226 | Symbiodinium Sp. | MLAIAGCGLSYQAFVQTAGSSHGAPTQALRGNASQATRTNLSSASVSAAASITGLAVLGASRARGDKVRRCAEFNGADMPGATAPLGWFDPLGLGKTEERFNKMRAAELKHGRVAMMASLGCVVQHWAKFPGFESAPAGLGALSNPAALGGMGALFLGCGVLELGFWSDEAAKEPGNFGDPANFSAEYGAYSKEFRDKEINHGRMAMMAIIGQLSAEAVTGMDAAQ |
| PCPI-12 | T | 206 | Symbiodinium Sp. | MAIIGQLSAEAVTGMDAAQQAGLAAVARPRQIQSSSAFVGAASIAPKRLTARRAFDASQEAGVTAPLGYFDPAGFVQDEESFLNLRRAEIKHGRVAMMAALGLLVQSLIKLPGFDSVPAGLGAQWTAPGDAGLWTVVVLCGFFETGLNQWREDPKQPGNFGDPMNLGNYTMEMRNKELNNGRIAMFAVMGIISAEIYTGNVAVAQF |
| PCPI-2 | U | 137 | Symbiodinium Sp. | SETFRRRRISEIKNGRVAMIACMGYIAPEYFRWPGYCSPSTDLKFADIPNGIQALYKMPAEAWAQIGVFIAFLELFPMRQEKDALPGDAPNFGRLGVPFFSSKADPEKNRRGLEAEINNGRLAMVAITGMISQNAFF |
| PCPI-1 | B | 269 | Symbiodinium Sp. | MARVAALALSAGGLAFVVPRSSTSTSSLRGVSVSAPAAEPTSSASWGAAAATATAALGLAAASATSATRRTARKAVGVCLPLTDKFDPLNLASTDEKLERYTQVEIKHGRVAMIAVVGYIMPEIFRFPGCESFQHGLAALESIPLEGWVQLAALVGAHEVLVKPRAGGLGTSDFGLGTELLDGIEEPELERKLTAERNNGRLAMVAIMGLMVQDGMFGEPPLSYMSKNGWWGEGVQYFVQHLNNCQSFSGSFVDNAGVCALPSRQGRTA |
| PCP-11 | C | 193 | Symbiodinium Sp. | ATKLSEGPFIETETYPAPKEMEMSAAVPFLRYPQVLKGWVGEEKGFDPLGVTDALPVYWVREAELKHGRVCMLATVGWIATDLGMRFPGDQFQSVQTTLEAHDKMVEAGLMAPFLGAVGTFELYSLWLFFKGWEMEVNRDAGDFFLGKQFLPKEPAKEKDMRLKELENGRLAMFAFSGIVTQAAMTGQAWPFM |
| PCPI-6 | D | 177 | Symbiodinium Sp. | GGYKMSPAVPFLPMSPALEGIPGEEEGFDPMGFSLAIDIRWLREAELKHGRVAMLATVGWIATDLGLRVPGEPFQVSTVEAHDAMVKFGSMPQMLVWMGYAELFGFLAIVNMFEGKTDRKPGDFGLRGFYPQDAKGQYDMQVKELRNGRLAMLAYGGIVTTAVLTQEKWPFFDAVVN |
| PCPI-5 | E | 253 | Symbiodinium Sp. | MAVAAGLLALPAFVPSSLTGAQAPAAPALRGNSQGSAGAGSASVGIAGAACAVLGAAALRRGVAARKALRRELAIAYEDSGIDLLDNGKFCQGLAGADGAWGRYEFDPLGFSKKTELVPYFREAELKHGRLAMLAWVGMVVPDFVRIPGEKFSFEAVPLPIDGHDAFSGATGVNAQILFWVGILEFCCAKKVFEWNSLEVAGDYGLTKFFPSDEEGQKKMRTAELKNGRLAMLAFGGAITQAVITRHPFPWLY |
| PCPI-8 | F | 286 | Symbiodinium Sp. | MEVAFLTPIATNVASSVAPAHAGKAPGPPGPAGASFGLTAAFGVAAALGLASRKRVQRAAQEMATLPKHMQPVDTADYPVYKPGPSGVPKLPQLVGDWGVPLPGSYKACLTMVGPDVETACEVGKPWDPLGLSKLYDRNFDFNGNMTYPHVQWLRESELKHGRCAMLAIVGIFAQQSFHIDGYPEAPWYEALKACYDNPAGIVGFGIAQISAFAMVIEGAYFPKDSWIGQMDREPGDLGFDPLKLAKDAESMKSMQLKELKNGRLAMMAFMSCVVGHYVPGSVPGV |
| PCPI-3 | I | 246 | Symbiodinium Sp. | MFFQDGLTGSAWGDWALYTDSPLRALTPAQESIAGTGGPFPENFWDPAGITSKKSKEEILELRAIELKHGRVAMLAVLGWFHVAAGFHIIGDLATGTYLDNNPLVSVTQLPMGGMWQTVFFIMCLEWVSTYVCPPPKSKPWDILGWSDILLEDEDNYWNQFRKAEVQELNNGRLAMMAIVGLIVQDIFFGDFGEVKVCFSSQTCQDIGDYLPGWTGPLPPVAYDFPPLYPAPEVPYTGYQAPLKLM |
| PsaL | L | 361 | Symbiodinium Sp. | MRDFASVSTALTLAAVCACTVLLTGDVLAFTAGVSRGPQLPPHATGASSLAGSSMPFASAQEVMGAKGVVCFGMGFGVLLALSRGLSQSRVSCKAEGSDIAVKEKADISKIAYLQDVPRTILEADVLEKLLMNTPRDQWEDPPEDTYLYTLKTFAEVYGPGKATKMGWWDYFRLKLDLPPGFELLDEDEMKVAADYDKLMMEGKIPFAVPGPAGFWYTGAVIQWKGKEQFAGDQVQTLTENGRFSKQFLANLAFYRDGLKPWQRGLEIGMAHGYFLIGPFTSLGPLRNTPEAATVGLLCGCAIVGLVSIGGLIFGSTIKPTRFDKEGDKPASGFIEMINWHAIGGLGGAGFAHALITVFGS |
| PsaM | M | 142 | Symbiodinium Sp. | MARSPLILCLVAAAVMLVAPRAFVSSPKSQNAAALTAGVAAGSMVMPAWAYDQQMMDAQLLLARVPGGKRTKELGLVVPIPEEDGLTDGQIAALFVVALVVLIAAVDLARSLYFGLQPNKFKTAKGKGSITPFMKRLIENGF |
| PsaR | R | 152 | Symbiodinium Sp. | MGLAAAWRARSSTAAGAEGGAYKETPADERLFEQVYLQYTSEYMKGPMYWHKDKLQGSLPDYPGRPMIRDGKYTPYVLGNLKSFSSNELAFLSMLFFGVGLYGNLQFNYYDPQWAKVDAGGYFNVSYIVESLLLPISFFMHIACYIQKQNGK |
| PsaT | X | 121 | Symbiodinium Sp. | MSRRAGSVVVLGALACLVWGPSFTGSVPRRQESALARMASSKWVNPEDPEMSHPSGLYVLPLKPAKPQENYIYTWKKGEDGSIEDYVKTPFKGPERAADYYTQRKGNGAWDHWGPQGEGEA |
| PsaU | Y | 223 | Symbiodinium Sp. | MARSLAVAALIAVAGGLAFVPGAIPRGTTAPPSRALQAAPAAESSWGSLPTLVGGMALGVFFSLATLAPVRAEEAPATPAPTPAEQAPTPAPGPSDEEILAKGCDIRVDCTTKEQQFAWAKAYYRKYNQETDGKDPKYSKPSTGAGVFRKFKIDWPNPDPSIPDTTDGTYPIRNEDFLPIWKQQQEDLRAKMKEYIGREFTEIRWIGDYDNARSPYKPHNGYY |
| PCPI-4 | G | 228 | Symbiodinium Sp. | MLGLAGAGAVTAASMGVSQRQRVVRRAEFAAGMAGSKLHGWGEYQFDPAGFATSYPELLGWFRESELKHGRVAMLAYVGLIVPDAFRLPFEEVQDSSLDLLSAHNKLIGPGLGEGPMWWLLLACGVIESFRFKQVGLAFESLTTENAGDLGLRMFAPSSAEGMESMKMKELKNGRLAMLAIGGALTQGVLFNAHHFPFMSALRSEKQSGIGSRSTMVGTAASMGVSQR |
| PCPI-10 | H | 271 | Symbiodinium Sp. | MALGAAAAAYLGSSAVQAFLAPSAPSPALRGAPGTSGTSASASSSGFSATSFGATAVATAALALARRGRGLVPRAAEAEPFAGGLIGGESAFAGQDFNFDPLGLATKCEKFLPWFREAELKHGRIAMLAWVGLVAPEFVRIPGPEQCYGAKTVVEAHNACAGDPYFPFIIDATDFYGKDGHQVGPLFQVFAFCGAVEMLTTFAKTANVSNKPGLTLANAGDYRLGANFLPEDEAKAKEMKLKELKNGRLAMLAFGGAITQATLTGNGFPWL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-05-31 Deposition Author(s): Li, K. , Liu, L.N. , Wang, N. , Zhang, Y.Z. , Zhao, L.S.