8JJR
Cryo-em structure of symbiodinium photosystem i
PDB DOI: 10.2210/pdb8jjr/pdb
Classification: PHOTOSYNTHESIS Organism(s): Lysinibacillus Sphaericus
Deposited: 2023-05-31 Deposition Author(s): Li, K. , Liu, L.N. , Wang, N. , Zhang, Y.Z. , Zhao, L.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
Cryo-em structure of symbiodinium photosystem i
Li, K. , Liu, L.N. , Wang, N. , Zhang, Y.Z. , Zhao, L.S.
Primary Citation of Related Structures: 8JJR
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| PsaA | A | 687 | Lysinibacillus Sphaericus | AIFRYVNATLWSKAGHFNKALSKGAKTTTWIWNLHASAHDFDIQQGSAGLIARKVFSSGLAHLSLVFFWLGGMHFHGAYLSNYSAWLKDPKSVAPSSHIAYSLVGQDILNSYTSQYFSGITITSGFFQLYRSEGIVTQSQLKYACAASLIATLICLSGSYLHMQLMSKFTSFYKKFQSLSQSHLIIMFGFGSVSFSAHQIHEALPINSLLDSGIWDPQLFSAITGKSTMAILLGTPSAITGKLLNPSTGSIFLSQVAAHHLAVGIVFITLGLIKWCNLFFSRNAILSLRLAYMDYHAQLSINLAVWASLSMVAAHHLTEIPVYPYESTDYPTVLCLFVHHACLSGFFTVASGAHASIFVIRQLPTSEIRHRDPIIGHLIWVCIALGLHSFGLYCHNDTLEALGRPEDTFCDNSIQLKPIFAKQFLGLQPGIEVLDGKIVRMTQELGTADFMVHHIHAFTIHVTLLILLKGVLYARNSRLVSDKLELGFAYPCDGPGRGGTCQISPWDHLFLAVFWMYNCLSVVIFHYFWKMQSDVWGSYVHLSQHLQLHCCSSLAHSSLTCSHYSQGDFSVNSITINGWLRNLLWSEASQVIQSYALPSICSYGFIFLAAHFVWAFSLMFLFSGRAYWQELIESILWSHHKLKIVPHIQPRALSISQGRAVGLTHYVLGGIGCTWAFIISRMLVLTT |
| PsaJ | J | 141 | Lysinibacillus Sphaericus | MARFTNLILVAACVLLGNRFYTLLFANAPSQNLRSHVAVRAVDERDEGLVLITPEESGKVVKRDVNNNPPRIVMKTNDWDQPEIQLSTGASNQINYITPVVASDDIKAWLSLNVNFFSILALLTVGGIIEIQRFFPDTLYW |
| PCPI-13 | K | 226 | Lysinibacillus Sphaericus | MLAIAGCGLSYQAFVQTAGSSHGAPTQALRGNASQATRTNLSSASVSAAASITGLAVLGASRARGDKVRRCAEFNGADMPGATAPLGWFDPLGLGKTEERFNKMRAAELKHGRVAMMASLGCVVQHWAKFPGFESAPAGLGALSNPAALGGMGALFLGCGVLELGFWSDEAAKEPGNFGDPANFSAEYGAYSKEFRDKEINHGRMAMMAIIGQLSAEAVTGMDAAQ |
| PCPI-12 | T | 206 | Lysinibacillus Sphaericus | MAIIGQLSAEAVTGMDAAQQAGLAAVARPRQIQSSSAFVGAASIAPKRLTARRAFDASQEAGVTAPLGYFDPAGFVQDEESFLNLRRAEIKHGRVAMMAALGLLVQSLIKLPGFDSVPAGLGAQWTAPGDAGLWTVVVLCGFFETGLNQWREDPKQPGNFGDPMNLGNYTMEMRNKELNNGRIAMFAVMGIISAEIYTGNVAVAQF |
| PCPI-2 | U | 137 | Lysinibacillus Sphaericus | SETFRRRRISEIKNGRVAMIACMGYIAPEYFRWPGYCSPSTDLKFADIPNGIQALYKMPAEAWAQIGVFIAFLELFPMRQEKDALPGDAPNFGRLGVPFFSSKADPEKNRRGLEAEINNGRLAMVAITGMISQNAFF |
| PCPI-1 | B | 269 | Lysinibacillus Sphaericus | MARVAALALSAGGLAFVVPRSSTSTSSLRGVSVSAPAAEPTSSASWGAAAATATAALGLAAASATSATRRTARKAVGVCLPLTDKFDPLNLASTDEKLERYTQVEIKHGRVAMIAVVGYIMPEIFRFPGCESFQHGLAALESIPLEGWVQLAALVGAHEVLVKPRAGGLGTSDFGLGTELLDGIEEPELERKLTAERNNGRLAMVAIMGLMVQDGMFGEPPLSYMSKNGWWGEGVQYFVQHLNNCQSFSGSFVDNAGVCALPSRQGRTA |
| PCP-11 | C | 193 | Lysinibacillus Sphaericus | ATKLSEGPFIETETYPAPKEMEMSAAVPFLRYPQVLKGWVGEEKGFDPLGVTDALPVYWVREAELKHGRVCMLATVGWIATDLGMRFPGDQFQSVQTTLEAHDKMVEAGLMAPFLGAVGTFELYSLWLFFKGWEMEVNRDAGDFFLGKQFLPKEPAKEKDMRLKELENGRLAMFAFSGIVTQAAMTGQAWPFM |
| PCPI-6 | D | 177 | Lysinibacillus Sphaericus | GGYKMSPAVPFLPMSPALEGIPGEEEGFDPMGFSLAIDIRWLREAELKHGRVAMLATVGWIATDLGLRVPGEPFQVSTVEAHDAMVKFGSMPQMLVWMGYAELFGFLAIVNMFEGKTDRKPGDFGLRGFYPQDAKGQYDMQVKELRNGRLAMLAYGGIVTTAVLTQEKWPFFDAVVN |
| PCPI-5 | E | 253 | Lysinibacillus Sphaericus | MAVAAGLLALPAFVPSSLTGAQAPAAPALRGNSQGSAGAGSASVGIAGAACAVLGAAALRRGVAARKALRRELAIAYEDSGIDLLDNGKFCQGLAGADGAWGRYEFDPLGFSKKTELVPYFREAELKHGRLAMLAWVGMVVPDFVRIPGEKFSFEAVPLPIDGHDAFSGATGVNAQILFWVGILEFCCAKKVFEWNSLEVAGDYGLTKFFPSDEEGQKKMRTAELKNGRLAMLAFGGAITQAVITRHPFPWLY |
| PCPI-8 | F | 286 | Lysinibacillus Sphaericus | MEVAFLTPIATNVASSVAPAHAGKAPGPPGPAGASFGLTAAFGVAAALGLASRKRVQRAAQEMATLPKHMQPVDTADYPVYKPGPSGVPKLPQLVGDWGVPLPGSYKACLTMVGPDVETACEVGKPWDPLGLSKLYDRNFDFNGNMTYPHVQWLRESELKHGRCAMLAIVGIFAQQSFHIDGYPEAPWYEALKACYDNPAGIVGFGIAQISAFAMVIEGAYFPKDSWIGQMDREPGDLGFDPLKLAKDAESMKSMQLKELKNGRLAMMAFMSCVVGHYVPGSVPGV |
| PCPI-3 | I | 246 | Lysinibacillus Sphaericus | MFFQDGLTGSAWGDWALYTDSPLRALTPAQESIAGTGGPFPENFWDPAGITSKKSKEEILELRAIELKHGRVAMLAVLGWFHVAAGFHIIGDLATGTYLDNNPLVSVTQLPMGGMWQTVFFIMCLEWVSTYVCPPPKSKPWDILGWSDILLEDEDNYWNQFRKAEVQELNNGRLAMMAIVGLIVQDIFFGDFGEVKVCFSSQTCQDIGDYLPGWTGPLPPVAYDFPPLYPAPEVPYTGYQAPLKLM |
| PsaL | L | 361 | Lysinibacillus Sphaericus | MRDFASVSTALTLAAVCACTVLLTGDVLAFTAGVSRGPQLPPHATGASSLAGSSMPFASAQEVMGAKGVVCFGMGFGVLLALSRGLSQSRVSCKAEGSDIAVKEKADISKIAYLQDVPRTILEADVLEKLLMNTPRDQWEDPPEDTYLYTLKTFAEVYGPGKATKMGWWDYFRLKLDLPPGFELLDEDEMKVAADYDKLMMEGKIPFAVPGPAGFWYTGAVIQWKGKEQFAGDQVQTLTENGRFSKQFLANLAFYRDGLKPWQRGLEIGMAHGYFLIGPFTSLGPLRNTPEAATVGLLCGCAIVGLVSIGGLIFGSTIKPTRFDKEGDKPASGFIEMINWHAIGGLGGAGFAHALITVFGS |
| PsaM | M | 142 | Lysinibacillus Sphaericus | MARSPLILCLVAAAVMLVAPRAFVSSPKSQNAAALTAGVAAGSMVMPAWAYDQQMMDAQLLLARVPGGKRTKELGLVVPIPEEDGLTDGQIAALFVVALVVLIAAVDLARSLYFGLQPNKFKTAKGKGSITPFMKRLIENGF |
| PsaR | R | 152 | Lysinibacillus Sphaericus | MGLAAAWRARSSTAAGAEGGAYKETPADERLFEQVYLQYTSEYMKGPMYWHKDKLQGSLPDYPGRPMIRDGKYTPYVLGNLKSFSSNELAFLSMLFFGVGLYGNLQFNYYDPQWAKVDAGGYFNVSYIVESLLLPISFFMHIACYIQKQNGK |
| PsaT | X | 121 | Lysinibacillus Sphaericus | MSRRAGSVVVLGALACLVWGPSFTGSVPRRQESALARMASSKWVNPEDPEMSHPSGLYVLPLKPAKPQENYIYTWKKGEDGSIEDYVKTPFKGPERAADYYTQRKGNGAWDHWGPQGEGEA |
| PsaU | Y | 223 | Lysinibacillus Sphaericus | MARSLAVAALIAVAGGLAFVPGAIPRGTTAPPSRALQAAPAAESSWGSLPTLVGGMALGVFFSLATLAPVRAEEAPATPAPTPAEQAPTPAPGPSDEEILAKGCDIRVDCTTKEQQFAWAKAYYRKYNQETDGKDPKYSKPSTGAGVFRKFKIDWPNPDPSIPDTTDGTYPIRNEDFLPIWKQQQEDLRAKMKEYIGREFTEIRWIGDYDNARSPYKPHNGYY |
| PCPI-4 | G | 228 | Lysinibacillus Sphaericus | MLGLAGAGAVTAASMGVSQRQRVVRRAEFAAGMAGSKLHGWGEYQFDPAGFATSYPELLGWFRESELKHGRVAMLAYVGLIVPDAFRLPFEEVQDSSLDLLSAHNKLIGPGLGEGPMWWLLLACGVIESFRFKQVGLAFESLTTENAGDLGLRMFAPSSAEGMESMKMKELKNGRLAMLAIGGALTQGVLFNAHHFPFMSALRSEKQSGIGSRSTMVGTAASMGVSQR |
| PCPI-10 | H | 271 | Lysinibacillus Sphaericus | MALGAAAAAYLGSSAVQAFLAPSAPSPALRGAPGTSGTSASASSSGFSATSFGATAVATAALALARRGRGLVPRAAEAEPFAGGLIGGESAFAGQDFNFDPLGLATKCEKFLPWFREAELKHGRIAMLAWVGLVAPEFVRIPGPEQCYGAKTVVEAHNACAGDPYFPFIIDATDFYGKDGHQVGPLFQVFAFCGAVEMLTTFAKTANVSNKPGLTLANAGDYRLGANFLPEDEAKAKEMKLKELKNGRLAMLAFGGAITQATLTGNGFPWL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-05-31 Deposition Author(s): Li, K. , Liu, L.N. , Wang, N. , Zhang, Y.Z. , Zhao, L.S.