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8JIV

Atomic structure of wheat ribosome reveals unique features of the plant ribosomes

PDB DOI: 10.2210/pdb8jiv/pdb

Classification: RIBOSOME
Organism(s): Exiguobacterium Sp. Kkbo11

Deposited: 2023-05-28
Deposition Author(s): Hussain, T. , Mishra, R.K. , Sharma, P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.84 Å

8jiv
Literature

Atomic structure of wheat ribosome reveals unique features of the plant ribosomes

Hussain, T. , Mishra, R.K. , Sharma, P.

Primary Citation of Related Structures: 8JIV


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
25S rRNA aa 3391 NA GCGACCCCAGGUCAGGCGGGACUACCCGCUGAGUUUAAGCAUAUAAAUAAGCGGAGGAGAAGAAACUUACAAGGAUUCCCCUAGUAACGGCGAGCGAACCGGGAGCAGCCCAGCUUGAGAAUCGGGCGGCUGUGCCGUCCGAAUUGUAGUCUGGAGAGGCGUCCUCAGCGACGGACCGGGCCCAAGUCCCCUGGAAAGGGGCGCCUGGGAGGGUGAGAGCCCCGUCCGGCCCGGACCCUGUCGCCCCACGAGGCGCCGUCAACGAGUCGGGUUGUUUGGGAAUGCAGCCCAAAUCGGGCGGUAGACUCCGUCCAAGGCUAAAUACAGGCGAGAGACCGAUAGCGAACAAGUACCGCGAGGGAAAGAUGAAAAGGACUUUGAAAAGAGAGUCAAAGAGUGCUUGAAAUUGCCGGGAGGGAAGCGGAUGGGGGCCGGCGAUGCGCCCCGGCCGUAUGCGGAACGGCUCUUGCUGGUCCGCCGCUCGGCUCGGGGUGUGGACUGUUGUCGGCCGCGCCGGCGGCCAAAGCCCGGGGGCCCUAGGUGCCCCCGGUGGCCGUCGUCGGCACGGCCGGUACCCGCGCGCCUAAAGGCGUGUCCCUCGGGGCACUGCGCUGCAACGGCCUGCGGGCUCCCCAUCCGACCCGUCUUGAAACACGGACCAAGGAGUCUGACAUGCGUGCGAGUCGACGGGUUCUGAAACCUGGGAUGCGCAAGGAAGCUGACGAGCGGGAGGCCCUCACGGGCCGCACCGCUGGCCGACCCUGAUCUUCUGUGAAGGGUUCGAGUUGGAGCACGCCUGUCGGGACCCGAAAGAUGGUGAACUAUGCCUGAGCGGGGCGAAGCCAGAGGAAACUCUGGUGGAGGCUCGAAGCGAUACUGACGUGCAAAUCGUUCGUCUGACUUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUAGCUGGAGCCCAUUACGAGUUCUAUCAGGUAAAGCCAAUGAUUAGAGGCAUUGGGGACGCAACGUCCUCGACCUAUUCUCAAACUUUAAAUAGGUAGGAUGGCGCGGCUGCUUCGGUGAGCCGUGCCAUGGAAUCGGGUGCUCCAAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGGAAGCCGGGUUACGGUGCCCAACUGCGCGCUAACCUAGAACCCACAAAGGGUGUUGGUCGAUUAAGACAGCAGGACGGUGGUCAUGGAAGUCGAAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCCGAAAAUGGAUGGCGCUGAAGCGCGCGACCCACACCCGGCCAUCUGGGCGAGCGCCAUGCCCCGAUGAGUAGGAGGGCGCGGCGGCCGCUGCAAAACCCGGGGCGCGAGCCCGGGCGGAGCGGCCGUCGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGGCCGAAGAGGAGAAAGGUUCCAUGUGAACGGCACUUGCACAUGGGUAAGCCGAUCCUAAGGGACGGGGUAACCCCGGCAGAUAGCGCGAUCACGCGCAUCCCCCGAAAGGGAAUCGGGUUAAGAUUUCCCGAGCCGGGAUGUGGCGGUUGACGGCGACGUUAGGAAGUCCGGAGACGCCGGCGGGGGCCUCGGGAAGAGUUAUCUUUUCUGCUUAACGGCCUGCCAACCCUGGAAACGGUUCAGCCGGAGGUAGGGUCCAGUGGCCGGAAGAGCACCGCACGUCGCGCGGUGUCCGGUGCGCCCCCGGCGGCCCAUGAAAAUCCGGAGGACCGAGUACCGUUCACGCCCGGUCGUACUCAUAACCGCAUCAGGUCUCCAAGGUGAACAGCCUCUGGCCAAUGGAACAAUGUAGGCAAGGGAAGUCGGCAAAACGGAUCCGUAACUUCGGGAAAAGGAUUGGCUCUGAGGACUGGGCUCGGGGGUCCCGGCCCCGAACCCGUCGGCUGUCGGCGGAUUGCUCGAGCUGCUCACGCGGCGAGAGCGGGUCGCCGCGUGCCGGCCGGGGGACGGACCGGGAAUCGCCCCUUCGGGGGCUUUCCCCGAGCAUGAAACAGUCGACUCAGAACUGGUACGGACAAGGGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGUCCUCGCGGAUGCUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUGUCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCUUGGCGGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCCGACUUUGUGAAAUGACUUGAGAGGUGUAGGAUAAGUGGGAGCCCUCACGGGCGCAAGUGAAAUACCACUACUUUUAACGUUAUUUUACUUAUUCCGUGGGUCGGAAGCGGGGCAUGUCCCCUCCUUUUGGCUCCAAGGCCCGGUCUUACCGGGCCGAUCCGGGCGGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAAAGAUAACGCAGGUGUCCUAAGAUGAGCUCAACGAGAACAGAAAUCUCGUGUGGAACAAAAGGGUAAAAGCUCGUUUGAUUCUGAUUUCCAGUACGAAUACGAACCGUGAAAGCGUGGCCUAUCGAUCCUUUAGAUCUUCGGAGUUUGAAGCUAGAGGUGUCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGUGUUGGAUUGUUCACCCACCAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGACAGUGUCGCGAUAGUAAUUCAACCUAGUACGAGAGGAACCGUUGAUUCACACAAUUGGUCAUCGCGCUUGGUUGAAAAGCCAGUGGCGCGAAGCUACCGUGUGCCGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCAAGCUAGCAUGCGACGCCUGCGCCCGCCGCCCGCCCCGACCCACGUUAGGGGCGCUUGCGCCCCCAAGGGCCCGUGCCAUUGGCUAAGCCGGUCCGGCCGAAGUGCCGCGGCCGGCCGCCUCGAAGCUCCCUUCCCAACGGGCGGUGGGCUGAAUCCUUUGCAGACGACUUAAAUACGCGACGGGGCAUUGUAAGUGGCAGAGUGGCCUUGCUGCCACGAUCCACUGAGAUCCAGCCCCAUGUCGCACGGAUUCGU
5S rRNA ab 119 NA GGAUGCGAUCAUACCAGCACUAAGGCAUCGGAUCCCGUCAGAACUCCGAAGUUAAGCGUGCUUGGGCGAGAGUAGUACAAGGAUGGGUGACCUCUUGGGAAGUCCUCGUGUUGCAUUCC
5.8S rRNA ac 158 NA CGACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACCUGGUGUGAAUUGCAGAAUCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAGGCCACUCGGCCGAGGGCACGCCUGCCUGGGCGUCACG

Proteins
Molecule Chains Sequence Length Organism Sequence
60S ribosomal protein L34 CG 119 Exiguobacterium Sp. Kkbo11 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPTEYKRSRLSRNRRTVNRPYGGVLSGPAVRERIIRAFLVEEQKIVKKVLKIQKTKEKTTKS
60S ribosomal protein L35 CH 124 Exiguobacterium Sp. Kkbo11 MSSGKVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYAPLDLRAKQTRAIRRRLSPDEKSRVLEKTKKRTVHFPQRKFAIKA
60S ribosomal protein L36 CI 111 Exiguobacterium Sp. Kkbo11 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGTGTEKKK
Ribosomal protein L37 CJ 93 Exiguobacterium Sp. Kkbo11 MTKGTGSFGKRRNKTHTLCIRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEAAPRNRAAAN
Ribosomal protein L39 CL 51 Exiguobacterium Sp. Kkbo11 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Ubiquitin-like domain-containing protein CM 129 Exiguobacterium Sp. Kkbo11 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLQALARKYNQEKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN
Ribosomal protein L15 CN 204 Exiguobacterium Sp. Kkbo11 MGAYKFVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRITRPTRPDRARRLGFKAKQGYVVYRIRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRRLGGLRVLNSYWVNEDSTYKYFEVILVDVAHSAVRNDPRINWLCKPVHKHRELRGLTSAGKKFRGLRGKGHRHHKNRPSRRATWKRNQTVSLRRYR
Genome assembly, chromosome: II CO 105 Exiguobacterium Sp. Kkbo11 MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQRAIKRCKHFEIGGDKKGKGTSLF
60S ribosomal protein L37a, expressed CP 92 Exiguobacterium Sp. Kkbo11 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA
Ribosomal protein L18e/L15P domain-containing protein CQ 188 Exiguobacterium Sp. Kkbo11 MGIDLVAGGRNKRTKRVAPKSDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFMSKTNRPPLSMRRLSNFMKGKEEKNIAVVVGTITDDMRIQEVPAMKVTALRFTETARARIINAGGECLTFDQLALRAPTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV
Ribosomal L28e/Mak16 domain-containing protein CR 147 Exiguobacterium Sp. Kkbo11 MTTVPGSLVWELVKKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKFSGLANSKTVAVQPSAGEDKAVVLSTTKTKKQNTPAKLQHKTLMRKEFRKMAKSVKNQVCDNYYRPDLTKPALARLSAVYRSLQVSKSGIKKKNRQPTKL
60S ribosomal protein L18a CS 178 Exiguobacterium Sp. Kkbo11 MVAHRFHQYQVVGRALPAPGDEQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKANGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRAPCIQIIKTATVDFKLCKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLFM
60S ribosomal protein L21 CT 164 Exiguobacterium Sp. Kkbo11 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKVRGEVISTKRQPAGPKPGFMVEGTTIETVTPIPYDVVNDLKGGY
Genome assembly, chromosome: II CU 129 Exiguobacterium Sp. Kkbo11 MARGAAAAAAAAKGKKKGSVSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED
Ribosomal protein L17 CV 136 Exiguobacterium Sp. Kkbo11 GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
TRASH domain-containing protein CW 161 Exiguobacterium Sp. Kkbo11 MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALEIKERIKKTKDEKKAKKAEVTKSQKSQGGKGAVQKGSKGPKIGGGGGKR
Genome assembly, chromosome: II CX 152 Exiguobacterium Sp. Kkbo11 MAPKVAVAKKGDAKAQAAKVAKAVKSGSIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII
KOW domain-containing protein CY 127 Exiguobacterium Sp. Kkbo11 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRGTYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVIVTKLKLDKDRKALLDRKARGRAA
60S ribosomal protein L27 CZ 137 Exiguobacterium Sp. Kkbo11 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFKDVASGGPDALATRDKKVASCKAAKARLEERFKTGKNRWFFTKLRF
Ribosomal protein L2 C-terminal domain-containing protein CA 261 Exiguobacterium Sp. Kkbo11 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSVGNVLPLRSVPEGGVICNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAASAAKADKAT
Ribosomal protein L3 CB 385 Exiguobacterium Sp. Kkbo11 MSHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIRKMKGLKQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMGKSGQESHEACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQKFYG
60S ribosomal protein L4 C-terminal domain-containing protein CC 405 Exiguobacterium Sp. Kkbo11 MATQTRPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDSDYAEFDNFSKWLGVTQ
Ribosomal protein L5 eukaryotic C-terminal domain-containing protein CD 307 Exiguobacterium Sp. Kkbo11 MFWMDFQVFVKNQKTRAYSKRFQVKFKRRRQGKTDYRARLRLTNQDKNKYNTPKYRFVVRFTNKDVTAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKCRDLDQEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDAEIHRKYIYGGHVADYMKSLADEEPEKYQSHFSEYIKKGIEADNMEALYKKVHAAIRADPTMAKSTKEPPKTHKRYNPKKLTYEQRKASLVERLNALNSSAGADVDEDDDE
60S ribosomal protein L6 CE 232 Exiguobacterium Sp. Kkbo11 SPDCRSASTEESPMAPTSKMALGIKRASRSHTYHRRGLWAIKAKHGGALPKAEKPAAVAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISKVNVQKFDDKYFAREKKTRAKKTEGELFESDKEATKNLPDFKKDDQKVIDAELIKAIDAVPDLKNYLGARFSLRDGDKPHEMTF
60S ribosomal protein uL30 CF 244 Exiguobacterium Sp. Kkbo11 MASEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLANNKVIEEGLGKHNIICIEDLVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINQLVRRMN
60S ribosomal protein L38 CK 69 Exiguobacterium Sp. Kkbo11 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSLPPGLNVQEV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-05-28
Deposition Author(s): Hussain, T. , Mishra, R.K. , Sharma, P.