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FASTA Sequence PDB Format mmCIF Format
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8JIV

Atomic structure of wheat ribosome reveals unique features of the plant ribosomes

PDB DOI: 10.2210/pdb8jiv/pdb

Classification: RIBOSOME
Organism(s): Triticum Aestivum

Deposited: 2023-05-28
Deposition Author(s): Hussain, T. , Mishra, R.K. , Sharma, P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.84 Å

8jiv
Literature

Atomic structure of wheat ribosome reveals unique features of the plant ribosomes

Hussain, T. , Mishra, R.K. , Sharma, P.

Primary Citation of Related Structures: 8JIV


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
25S rRNA aa 3391 NA GCGACCCCAGGUCAGGCGGGACUACCCGCUGAGUUUAAGCAUAUAAAUAAGCGGAGGAGAAGAAACUUACAAGGAUUCCCCUAGUAACGGCGAGCGAACCGGGAGCAGCCCAGCUUGAGAAUCGGGCGGCUGUGCCGUCCGAAUUGUAGUCUGGAGAGGCGUCCUCAGCGACGGACCGGGCCCAAGUCCCCUGGAAAGGGGCGCCUGGGAGGGUGAGAGCCCCGUCCGGCCCGGACCCUGUCGCCCCACGAGGCGCCGUCAACGAGUCGGGUUGUUUGGGAAUGCAGCCCAAAUCGGGCGGUAGACUCCGUCCAAGGCUAAAUACAGGCGAGAGACCGAUAGCGAACAAGUACCGCGAGGGAAAGAUGAAAAGGACUUUGAAAAGAGAGUCAAAGAGUGCUUGAAAUUGCCGGGAGGGAAGCGGAUGGGGGCCGGCGAUGCGCCCCGGCCGUAUGCGGAACGGCUCUUGCUGGUCCGCCGCUCGGCUCGGGGUGUGGACUGUUGUCGGCCGCGCCGGCGGCCAAAGCCCGGGGGCCCUAGGUGCCCCCGGUGGCCGUCGUCGGCACGGCCGGUACCCGCGCGCCUAAAGGCGUGUCCCUCGGGGCACUGCGCUGCAACGGCCUGCGGGCUCCCCAUCCGACCCGUCUUGAAACACGGACCAAGGAGUCUGACAUGCGUGCGAGUCGACGGGUUCUGAAACCUGGGAUGCGCAAGGAAGCUGACGAGCGGGAGGCCCUCACGGGCCGCACCGCUGGCCGACCCUGAUCUUCUGUGAAGGGUUCGAGUUGGAGCACGCCUGUCGGGACCCGAAAGAUGGUGAACUAUGCCUGAGCGGGGCGAAGCCAGAGGAAACUCUGGUGGAGGCUCGAAGCGAUACUGACGUGCAAAUCGUUCGUCUGACUUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUAGCUGGAGCCCAUUACGAGUUCUAUCAGGUAAAGCCAAUGAUUAGAGGCAUUGGGGACGCAACGUCCUCGACCUAUUCUCAAACUUUAAAUAGGUAGGAUGGCGCGGCUGCUUCGGUGAGCCGUGCCAUGGAAUCGGGUGCUCCAAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGGAAGCCGGGUUACGGUGCCCAACUGCGCGCUAACCUAGAACCCACAAAGGGUGUUGGUCGAUUAAGACAGCAGGACGGUGGUCAUGGAAGUCGAAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCCGAAAAUGGAUGGCGCUGAAGCGCGCGACCCACACCCGGCCAUCUGGGCGAGCGCCAUGCCCCGAUGAGUAGGAGGGCGCGGCGGCCGCUGCAAAACCCGGGGCGCGAGCCCGGGCGGAGCGGCCGUCGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGGCCGAAGAGGAGAAAGGUUCCAUGUGAACGGCACUUGCACAUGGGUAAGCCGAUCCUAAGGGACGGGGUAACCCCGGCAGAUAGCGCGAUCACGCGCAUCCCCCGAAAGGGAAUCGGGUUAAGAUUUCCCGAGCCGGGAUGUGGCGGUUGACGGCGACGUUAGGAAGUCCGGAGACGCCGGCGGGGGCCUCGGGAAGAGUUAUCUUUUCUGCUUAACGGCCUGCCAACCCUGGAAACGGUUCAGCCGGAGGUAGGGUCCAGUGGCCGGAAGAGCACCGCACGUCGCGCGGUGUCCGGUGCGCCCCCGGCGGCCCAUGAAAAUCCGGAGGACCGAGUACCGUUCACGCCCGGUCGUACUCAUAACCGCAUCAGGUCUCCAAGGUGAACAGCCUCUGGCCAAUGGAACAAUGUAGGCAAGGGAAGUCGGCAAAACGGAUCCGUAACUUCGGGAAAAGGAUUGGCUCUGAGGACUGGGCUCGGGGGUCCCGGCCCCGAACCCGUCGGCUGUCGGCGGAUUGCUCGAGCUGCUCACGCGGCGAGAGCGGGUCGCCGCGUGCCGGCCGGGGGACGGACCGGGAAUCGCCCCUUCGGGGGCUUUCCCCGAGCAUGAAACAGUCGACUCAGAACUGGUACGGACAAGGGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGUCCUCGCGGAUGCUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUGUCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCUUGGCGGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCCGACUUUGUGAAAUGACUUGAGAGGUGUAGGAUAAGUGGGAGCCCUCACGGGCGCAAGUGAAAUACCACUACUUUUAACGUUAUUUUACUUAUUCCGUGGGUCGGAAGCGGGGCAUGUCCCCUCCUUUUGGCUCCAAGGCCCGGUCUUACCGGGCCGAUCCGGGCGGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAAAGAUAACGCAGGUGUCCUAAGAUGAGCUCAACGAGAACAGAAAUCUCGUGUGGAACAAAAGGGUAAAAGCUCGUUUGAUUCUGAUUUCCAGUACGAAUACGAACCGUGAAAGCGUGGCCUAUCGAUCCUUUAGAUCUUCGGAGUUUGAAGCUAGAGGUGUCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGUGUUGGAUUGUUCACCCACCAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGACAGUGUCGCGAUAGUAAUUCAACCUAGUACGAGAGGAACCGUUGAUUCACACAAUUGGUCAUCGCGCUUGGUUGAAAAGCCAGUGGCGCGAAGCUACCGUGUGCCGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCAAGCUAGCAUGCGACGCCUGCGCCCGCCGCCCGCCCCGACCCACGUUAGGGGCGCUUGCGCCCCCAAGGGCCCGUGCCAUUGGCUAAGCCGGUCCGGCCGAAGUGCCGCGGCCGGCCGCCUCGAAGCUCCCUUCCCAACGGGCGGUGGGCUGAAUCCUUUGCAGACGACUUAAAUACGCGACGGGGCAUUGUAAGUGGCAGAGUGGCCUUGCUGCCACGAUCCACUGAGAUCCAGCCCCAUGUCGCACGGAUUCGU
5S rRNA ab 119 NA GGAUGCGAUCAUACCAGCACUAAGGCAUCGGAUCCCGUCAGAACUCCGAAGUUAAGCGUGCUUGGGCGAGAGUAGUACAAGGAUGGGUGACCUCUUGGGAAGUCCUCGUGUUGCAUUCC
5.8S rRNA ac 158 NA CGACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACCUGGUGUGAAUUGCAGAAUCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAGGCCACUCGGCCGAGGGCACGCCUGCCUGGGCGUCACG

Proteins
Molecule Chains Sequence Length Organism Sequence
60S ribosomal protein L34 CG 119 Triticum Aestivum MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPTEYKRSRLSRNRRTVNRPYGGVLSGPAVRERIIRAFLVEEQKIVKKVLKIQKTKEKTTKS
60S ribosomal protein L35 CH 124 Triticum Aestivum MSSGKVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYAPLDLRAKQTRAIRRRLSPDEKSRVLEKTKKRTVHFPQRKFAIKA
60S ribosomal protein L36 CI 111 Triticum Aestivum MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGTGTEKKK
Ribosomal protein L37 CJ 93 Triticum Aestivum MTKGTGSFGKRRNKTHTLCIRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEAAPRNRAAAN
Ribosomal protein L39 CL 51 Triticum Aestivum MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Ubiquitin-like domain-containing protein CM 129 Triticum Aestivum MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLQALARKYNQEKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN
Ribosomal protein L15 CN 204 Triticum Aestivum MGAYKFVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRITRPTRPDRARRLGFKAKQGYVVYRIRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRRLGGLRVLNSYWVNEDSTYKYFEVILVDVAHSAVRNDPRINWLCKPVHKHRELRGLTSAGKKFRGLRGKGHRHHKNRPSRRATWKRNQTVSLRRYR
Genome assembly, chromosome: II CO 105 Triticum Aestivum MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQRAIKRCKHFEIGGDKKGKGTSLF
60S ribosomal protein L37a, expressed CP 92 Triticum Aestivum MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA
Ribosomal protein L18e/L15P domain-containing protein CQ 188 Triticum Aestivum MGIDLVAGGRNKRTKRVAPKSDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFMSKTNRPPLSMRRLSNFMKGKEEKNIAVVVGTITDDMRIQEVPAMKVTALRFTETARARIINAGGECLTFDQLALRAPTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV
Ribosomal L28e/Mak16 domain-containing protein CR 147 Triticum Aestivum MTTVPGSLVWELVKKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKFSGLANSKTVAVQPSAGEDKAVVLSTTKTKKQNTPAKLQHKTLMRKEFRKMAKSVKNQVCDNYYRPDLTKPALARLSAVYRSLQVSKSGIKKKNRQPTKL
60S ribosomal protein L18a CS 178 Triticum Aestivum MVAHRFHQYQVVGRALPAPGDEQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKANGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRAPCIQIIKTATVDFKLCKRDNTKQFHNSKIKFPLVYQKVRPPTRKLKTTYKATRPNLFM
60S ribosomal protein L21 CT 164 Triticum Aestivum MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKVRGEVISTKRQPAGPKPGFMVEGTTIETVTPIPYDVVNDLKGGY
Genome assembly, chromosome: II CU 129 Triticum Aestivum MARGAAAAAAAAKGKKKGSVSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED
Ribosomal protein L17 CV 136 Triticum Aestivum GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
TRASH domain-containing protein CW 161 Triticum Aestivum MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALEIKERIKKTKDEKKAKKAEVTKSQKSQGGKGAVQKGSKGPKIGGGGGKR
Genome assembly, chromosome: II CX 152 Triticum Aestivum MAPKVAVAKKGDAKAQAAKVAKAVKSGSIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII
KOW domain-containing protein CY 127 Triticum Aestivum MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRGTYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVIVTKLKLDKDRKALLDRKARGRAA
60S ribosomal protein L27 CZ 137 Triticum Aestivum MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFKDVASGGPDALATRDKKVASCKAAKARLEERFKTGKNRWFFTKLRF
Ribosomal protein L2 C-terminal domain-containing protein CA 261 Triticum Aestivum MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSVGNVLPLRSVPEGGVICNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAASAAKADKAT
Ribosomal protein L3 CB 385 Triticum Aestivum MSHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIRKMKGLKQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMGKSGQESHEACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQKFYG
60S ribosomal protein L4 C-terminal domain-containing protein CC 405 Triticum Aestivum MATQTRPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDSDYAEFDNFSKWLGVTQ
Ribosomal protein L5 eukaryotic C-terminal domain-containing protein CD 307 Triticum Aestivum MFWMDFQVFVKNQKTRAYSKRFQVKFKRRRQGKTDYRARLRLTNQDKNKYNTPKYRFVVRFTNKDVTAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKCRDLDQEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDAEIHRKYIYGGHVADYMKSLADEEPEKYQSHFSEYIKKGIEADNMEALYKKVHAAIRADPTMAKSTKEPPKTHKRYNPKKLTYEQRKASLVERLNALNSSAGADVDEDDDE
60S ribosomal protein L6 CE 232 Triticum Aestivum SPDCRSASTEESPMAPTSKMALGIKRASRSHTYHRRGLWAIKAKHGGALPKAEKPAAVAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISKVNVQKFDDKYFAREKKTRAKKTEGELFESDKEATKNLPDFKKDDQKVIDAELIKAIDAVPDLKNYLGARFSLRDGDKPHEMTF
60S ribosomal protein uL30 CF 244 Triticum Aestivum MASEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLANNKVIEEGLGKHNIICIEDLVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINQLVRRMN
60S ribosomal protein L38 CK 69 Triticum Aestivum MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSLPPGLNVQEV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-05-28
Deposition Author(s): Hussain, T. , Mishra, R.K. , Sharma, P.