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8J92

Cryo-em structure of nucleosome containing arabidopsis thaliana h2a.w

PDB DOI: 10.2210/pdb8j92/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Arabidopsis Thaliana , Synthetic Construct

Deposited: 2023-05-02
Deposition Author(s): Berger, F. , Hatazawa, S. , Horikoshi, N. , Kakutani, T. , Kurumizaka, H. , Osakabe, A. , Takizawa, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

8j92
Literature

Cryo-em structure of nucleosome containing arabidopsis thaliana h2a.w

Berger, F. , Hatazawa, S. , Horikoshi, N. , Kakutani, T. , Kurumizaka, H. , Osakabe, A. , Takizawa, Y.

Primary Citation of Related Structures: 8J92


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 139 Arabidopsis Thaliana , Synthetic Construct GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 139 Arabidopsis Thaliana , Synthetic Construct GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 106 Arabidopsis Thaliana , Synthetic Construct GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 106 Arabidopsis Thaliana , Synthetic Construct GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
HTA6 C 153 Arabidopsis Thaliana , Synthetic Construct GSHMESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKSATKPAEEKATKSPVKSPKKA
HTA6 G 153 Arabidopsis Thaliana , Synthetic Construct GSHMESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKSATKPAEEKATKSPVKSPKKA
HTB9 D 153 Arabidopsis Thaliana , Synthetic Construct GSHMAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
HTB9 H 153 Arabidopsis Thaliana , Synthetic Construct GSHMAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (169-MER) i 169 NA ATCGGACCCTATCGCGAGCCAGGCCTGAGAATCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT
DNA (169-MER) j 169 NA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGATTCTCAGGCCTGGCTCGCGATAGGGTCCGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-05-02
Deposition Author(s): Berger, F. , Hatazawa, S. , Horikoshi, N. , Kakutani, T. , Kurumizaka, H. , Osakabe, A. , Takizawa, Y.